Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Serinus_20canaria_20[refseq_20GCF_5F000534875.1_202014-01-15] 304,400 sequences; 1,152,100,110 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq77 159 7e-34 seq1 87.8 3e-12 >seq77 Length=1106213 Score = 159 bits (176), Expect = 7e-34 Identities = 179/237 (76%), Gaps = 2/237 (1%) Strand=Plus/Minus Query 244318 CAGCCCCTTGCTGACGGGGCTGCCCTCGTAGGTCGGGTAGGGACCGTCGCGCTGGGCCAG 244377 || |||||||||||| || ||||| |||||| |||||| || | || |||||| Sbjct 1102972 CACCCCCTTGCTGACCGGCGAGCCCTGGTAGGTGTCGTAGGGGCCCTGCTCCTTGGCCAG 1102913 Query 244378 CTTACAGCTCTCGTCGAGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTTGTTCATGTC 244437 || |||||| | || ||||| |||||||||||||||||||||| || ||| | | | Sbjct 1102912 CTCACAGCTGGCCTCCAGGGCCCCGTAGTAGATGGTCTCGAAGATGTGCTGGTTGAGG-C 1102854 Query 244438 GCGG-GCCTTGCCGCAGGTGAAGGGGATGCCCATCATCATGAAGACGTCGGCCAGTCCCT 244496 || | |||| | ||| |||||||| | ||||| |||||| |||| ||||| |||| Sbjct 1102853 GCTGCGCCTCGGCGCTCTCGAAGGGGAACCTCATCAGGATGAAGGCGTCAGCCAGGCCCT 1102794 Query 244497 GCACGCCGATGCCGATGGGTCTGTGTCGCTTGTTGGAGCGCATGGCTTCGGGCACGG 244553 ||||||||||||| ||||| | ||| ||| |||||||||| ||| | || |||| Sbjct 1102793 GCACGCCGATGCCAATGGGCCGGTGCCGCCGGTTGGAGCGCTCGGCCTGCGGGACGG 1102737 Score = 134 bits (148), Expect = 3e-26 Identities = 154/207 (74%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 244704 CCACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGAGGTTACTGCACTTGATGG 244763 ||||||| ||| | ||||||||| |||||||| ||||| ||||| ||||| ||||||| Sbjct 1101094 CCACCTCGTCCTTGCTGGTGTACTCCACAATCTCAGTGCACAGGTTGCTGCATTTGATGG 1101035 Query 244764 TGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCTTGTAGAGCATGAAGGGCC 244823 ||||||||| ||| || ||| ||| |||||| | |||||||||||||||| |||| Sbjct 1101034 TGCCCAGGTTCTGCTGGTTGCTCTTCCTGTTGCAAGAGTCCTTGTAGAGCATGTAGGGGG 1100975 Query 244824 CCCCGGTCTCGAGCTGGGCGACGAGGACGCTGTTCCAGAGGTCCCTAGCCTTGACCGTCC 244883 || |||||| ||||| ||| || | || |||||| | | ||||| ||| || Sbjct 1100974 TGCCAGTCTCGGTCTGGGACTCGATGATGGCGTACCAGAGCTGCTGGGCCTTCACCACCC 1100915 Query 244884 TGCGAGCCTTGCCCTCTGCCTCGTAGC 244910 |||| | ||||| |||||||| Sbjct 1100914 TGCGCACGCGGCCCTGCCGCTCGTAGC 1100888 >seq1 Length=88717973 Score = 87.8 bits (96), Expect = 3e-12 Identities = 101/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 42696 GGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCC 42755 || ||||| |||| |||||| | || || || ||||||||||| ||||| |||| || Sbjct 70130009 GGTGAGAGAGTGGTTGCCTTTGCTGCAGTGGAAGGCATCTTCTTTTCGGGTTCCTTTGCT 70129950 Query 42756 TCCATCTTCTGGCTCAAGCAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTC 42815 | || || ||||| ||| ||| || |||||| ||| | || ||||| || ||||| Sbjct 70129949 GCTATATTTTGGCTGAAGAAGAGGGGCCTGATGCCTGGATTGACTTTCTCCAATGAACTT 70129890 Query 42816 ATCAGCAGGGACGAGG 42831 || ||||| || |||| Sbjct 70129889 ATTAGCAGAGATGAGG 70129874 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 940745989344000