Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Serinus_20canaria_20[refseq_20GCF_5F000534875.1_202014-01-15] 304,400 sequences; 1,152,100,110 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq23300 87.8 1e-12 seq29 86.0 5e-12 seq204287 82.4 6e-11 >seq23300 Length=271 Score = 87.8 bits (96), Expect = 1e-12 Identities = 158/230 (69%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || |||||||| ||||||||||| || || ||| |||||||| ||||||||||||| | Sbjct 233 CCACCTCTCAGACGCAGCACCAGGTGCAGGGTGGATTCCTTCTGGATGTTGTAATCTGAC 174 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020 | || | || |||| ||||| || ||||| ||||| | |||||| || || Sbjct 173 AGGGTACGACCATCTTCCAGCTGCTTCCCTGCAAAGATCAGCCTCTGCTGGTCGGGGGGA 114 Query 34021 ACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTCACA---CTATCAGTAGATTCG 34077 | || ||| |||||| || || ||| | | || || | ||| | | ||| Sbjct 113 ATGCCCTCCTTGTCCTGGATCTTGGCCTTCA---CATTCTCAATGGTGTCACTGGGCTCG 57 Query 34078 CATTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 ||| | || || || || || || || || ||||||||||| ||||| Sbjct 56 ACTTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 7 >seq29 Length=9066916 Score = 86.0 bits (94), Expect = 5e-12 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || || || || ||||||||||| || || ||| |||||||| ||||||||||||| | Sbjct 5720080 CCCCCCCTGAGGCGCAGCACCAGGTGCAGGGTGGATTCCTTCTGGATGTTGTAATCTGAC 5720021 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020 | ||| | || |||| |||||||| ||||| ||||| | |||||| || || Sbjct 5720020 AGGGTGCGCCCATCCTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCTGGGGGA 5719961 Query 34021 ACGCTCTCTTTGTCC 34035 | || ||| |||||| Sbjct 5719960 ATGCCCTCCTTGTCC 5719946 >seq204287 Length=600 Score = 82.4 bits (90), Expect = 6e-11 Identities = 86/113 (76%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || |||||||| ||||||||||| || || ||| |||||||| ||||||||||||| | Sbjct 65 CCACCTCTCAGACGCAGCACCAGGTGCAGGGTGGATTCCTTCTGGATGTTGTAATCTGAC 124 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATC 34013 | || | || |||| |||||||| || || ||||| | |||||| || Sbjct 125 AGGGTACGACCATCCTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGGTC 177 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395589348128800