Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Serinus_20canaria_20[refseq_20GCF_5F000534875.1_202014-01-15] 304,400 sequences; 1,152,100,110 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq19 118 2e-21 seq204287 111 4e-19 seq110 84.2 5e-11 >seq19 Length=13664266 Score = 118 bits (130), Expect = 2e-21 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || || | || |||||||| | ||| ||| || ||||| || ||||| | | Sbjct 12085326 CCACCCCGCAGGCGCAGCACGAGATGCAGTGTGGATTCCTTCTGGATGTTGTAGTCAGAG 12085385 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || || || || || | || || || || |||||||| | ||| || | ||| Sbjct 12085386 AGGGTACGGCCATCCTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGG 12085445 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || ||||| || || ||||| || || || || ||||| || | || || | || || Sbjct 12085446 ATGCCTTCCTTGTCTTGGATCTTGGCCTTGACATTTTCAATGGTGTCACTGGGCTCGACC 12085505 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 || || ||||| ||||| || |||| ||||||||||| ||||||||| Sbjct 12085506 TCAAGGGTGATGGTCTTGCCAGTCAAGGTCTTGACGAAGATCTGCATT 12085553 >seq204287 Length=600 Score = 111 bits (122), Expect = 4e-19 Identities = 139/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 ||||| ||||| || ||||| | || ||||| || ||||| | || || || |||||| Sbjct 329 TCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCCAGCTGCTTGCCAGCGAAG 388 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 ||||| | ||| || ||||| ||||| || |||||||| || || ||||| || Sbjct 389 ATCAGCCTCTGCTGGTCGGGAGGGATACCTTCCTTGTCCTGGATCTTGGCCTTCACATTC 448 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | || || | || || || || ||||| ||||| || ||||| || || ||| Sbjct 449 TCGATGGTGTCACTGGGCTCAACCTCCAGAGTGATGGTCTTGCCAGTCAGGGTTTTTACG 508 Query 288463 AATATCTGCAT 288473 || |||||||| Sbjct 509 AAGATCTGCAT 519 Score = 98.7 bits (108), Expect = 2e-15 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||| || ||||| || || || | || || || || || || | || || || ||||| Sbjct 100 TTCCTTCTGGATGTTGTAATCTGACAGGGTACGACCATCCTCCAGCTGCTTGCCAGCGAA 159 Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401 |||||| | ||| || ||||| ||||| || |||||||| || || ||||| || Sbjct 160 GATCAGCCTCTGCTGGTCGGGAGGGATACCTTCCTTGTCCTGGATCTTGGCCTTCACATT 219 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 || || | || || | || ||||| || ||||| ||||| || ||||| ||||| || Sbjct 220 CTCGATGGTGTCACTGGGCTCGACTTCCAGGGTGATAGTCTTGCCAGTCAGGGTCTTCAC 279 Query 288462 GAATATCTGCAT 288473 || |||||||| Sbjct 280 AAAGATCTGCAT 291 >seq110 Length=666948 Score = 84.2 bits (92), Expect = 5e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 288370 CCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCG 288429 ||||| ||||||||||| || ||||||||||| || || | || | | || || ||| Sbjct 229043 CCTTCCTTATCCTGGATCTTGGCTTTCACGTTCTCGATGGTGTCATTGGGCTCCACCTCG 229102 Query 288430 AGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || ||||| || || || ||||| ||||| ||||| |||||||| Sbjct 229103 AGGGTGATGGTTTTGCCCGTCAGGGTCTTCACGAAGATCTGCAT 229146 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1175053600383200