Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Serinus_20canaria_20[refseq_20GCF_5F000534875.1_202014-01-15] 304,400 sequences; 1,152,100,110 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq204287 134 1e-26 seq19 132 5e-26 seq23300 122 9e-23 seq29 122 9e-23 seq25213 87.8 2e-12 >seq204287 Length=600 Score = 134 bits (148), Expect = 1e-26 Identities = 148/197 (75%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || || ||||| || |||||||| || | | ||||||| | ||||| ||||||||||| Sbjct 323 GTTGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCCAGCTGCTTGCCA 382 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 || | || |||| ||||||||||||||| || ||||| || || || || || ||| Sbjct 383 GCGAAGATCAGCCTCTGCTGGTCGGGAGGGATACCTTCCTTGTCCTGGATCTTGGCCTTC 442 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 ||| ||| | || |||| || || || || | ||| | ||||||||| |||| ||| Sbjct 443 ACATTCTCGATGGTGTCACTGGGCTCAACCTCCAGAGTGATGGTCTTGCCAGTCAGGGTT 502 Query 64427 TTTACGAAAATTTGCAT 64443 |||||||| || ||||| Sbjct 503 TTTACGAAGATCTGCAT 519 Score = 116 bits (128), Expect = 4e-21 Identities = 153/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 ||||| || || | || ||||| || || ||||||||||||| | ||| || | || Sbjct 80 AGCACCAGGTGCAGGGTGGATTCCTTCTGGATGTTGTAATCTGACAGGGTACGACCATCC 139 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || ||||||||||| || | || |||| ||||||||||||||| || ||||| || || Sbjct 140 TCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGGTCGGGAGGGATACCTTCCTTGTCC 199 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || || ||| ||| ||| | || |||| || || ||||| | || | ||| Sbjct 200 TGGATCTTGGCCTTCACATTCTCGATGGTGTCACTGGGCTCGACTTCCAGGGTGATAGTC 259 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||||| |||| || || || || || ||||| Sbjct 260 TTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 291 >seq19 Length=13664266 Score = 132 bits (146), Expect = 5e-26 Identities = 168/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || |||| | ||||| ||||| | || ||||| || || |||||||| || | Sbjct 12085325 ACCACCCCGCAGGCGCAGCACGAGATGCAGTGTGGATTCCTTCTGGATGTTGTAGTCAGA 12085384 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 || ||| || | || || ||||||||||| ||| | || |||| ||||||||| ||||| Sbjct 12085385 GAGGGTACGGCCATCCTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGG 12085444 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 || ||||| || ||||| || || ||| ||| || | || |||| || || || Sbjct 12085445 GATGCCTTCCTTGTCTTGGATCTTGGCCTTGACATTTTCAATGGTGTCACTGGGCTCGAC 12085504 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446 || | || | ||||||||| ||||| || || ||||| || |||||||| Sbjct 12085505 CTCAAGGGTGATGGTCTTGCCAGTCAAGGTCTTGACGAAGATCTGCATTTT 12085555 Score = 122 bits (134), Expect = 9e-23 Identities = 166/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || |||| | || || || || | || || || || || || ||||| || | Sbjct 12085097 ACCACCCCGCAGGCGCAGGACAAGGTGCAGAGTTGACTCCTTCTGGATATTGTAGTCAGA 12085156 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 || |||||| | ||||| ||||||||||| ||| | || |||| ||||||||| ||||| Sbjct 12085157 GAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGG 12085216 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCA 64394 || ||||| || ||||| | | || ||||| ||| ||| | || |||| || || | Sbjct 12085217 GATGCCTTCCTTGTCTTGGA-TCTTGGCTTTGACATTCTCAATGGTGTCACTGGGTTCGA 12085275 Query 64395 CTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 |||| | ||| | ||||||||| |||| || || || || || ||||| Sbjct 12085276 CTTCCAGAGTGATGGTCTTGCCAGTCAGGGTCTTGACAAAGATCTGCAT 12085324 >seq23300 Length=271 Score = 122 bits (134), Expect = 9e-23 Identities = 154/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 ||||| || || | || ||||| || || ||||||||||||| | ||| || | ||| Sbjct 218 AGCACCAGGTGCAGGGTGGATTCCTTCTGGATGTTGTAATCTGACAGGGTACGACCATCT 159 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || |||||||| || ||| | || |||| |||||||||||| ||||| || || || || Sbjct 158 TCCAGCTGCTTCCCTGCAAAGATCAGCCTCTGCTGGTCGGGGGGAATGCCCTCCTTGTCC 99 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || || ||| ||| ||| | || |||| || || ||||| | || | |||| Sbjct 98 TGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCGACTTCCAGGGTGATGGTC 39 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||||| |||| || || || || || ||||| Sbjct 38 TTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 7 >seq29 Length=9066916 Score = 122 bits (134), Expect = 9e-23 Identities = 154/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 ||||| || || | || ||||| || || ||||||||||||| | ||||||| | || Sbjct 5720065 AGCACCAGGTGCAGGGTGGATTCCTTCTGGATGTTGTAATCTGACAGGGTGCGCCCATCC 5720006 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || ||||||||||| ||| | || |||| ||||||||| || ||||| || || || || Sbjct 5720005 TCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATGCCCTCCTTGTCC 5719946 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || || ||| ||| ||| | || |||| || || || || | || | |||| Sbjct 5719945 TGGATCTTGGCCTTCACATTCTCGATGGTGTCACTGGGCTCAACCTCCAGGGTGATGGTC 5719886 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||||| |||| || || || || || ||||| Sbjct 5719885 TTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 5719854 Score = 91.5 bits (100), Expect = 1e-13 Identities = 140/200 (70%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || || ||||| || |||||||| || | || || || | ||||| ||||||||||| Sbjct 5719822 GTTGACTCTTTCTGGATGTTGTAGTCAGAGAGAGTACGACCATCTTCCAGCTGCTTGCCA 5719763 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 || | || | || |||||| || |||||||| || || || || || || || ||| Sbjct 5719762 GCGAAGATCAACCTCTGCTGATCTGGAGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTC 5719703 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 ||| ||| | || |||| || ||||| || | || | ||||| || |||| || Sbjct 5719702 ACATTCTCGATGGTGTCACTGGGCTCCACCTCAAGGGTGATAGTCTTTCCAGTCAGGGTC 5719643 Query 64427 TTTACGAAAATTTGCATTTT 64446 || || || || ||||| || Sbjct 5719642 TTCACAAAGATCTGCATGTT 5719623 >seq25213 Length=167 Score = 87.8 bits (96), Expect = 2e-12 Identities = 86/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 ||||| || || | || ||||| || || |||||||| || | | ||||||| | ||| Sbjct 57 AGCACCAGGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCT 116 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCT 64342 || ||||||||||| || | || |||| ||||||||||||||| || ||| Sbjct 117 TCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGGTCGGGAGGGATACCT 167 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 497743651536000