Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Serinus_20canaria_20[refseq_20GCF_5F000534875.1_202014-01-15] 304,400 sequences; 1,152,100,110 total letters Query= NC_010956.1 Length=35083 Score E Sequences producing significant alignments: (Bits) Value seq171425 246 7e-61 seq169466 170 4e-38 seq170248 123 6e-24 seq170088 80.6 6e-11 >seq171425 Length=537 Score = 246 bits (272), Expect = 7e-61 Identities = 316/418 (76%), Gaps = 20/418 (5%) Strand=Plus/Plus Query 6278 CCGCGCAGGGGCTCGTTGGTCCAGCAGAGTCTGCCGCCCTTGCGCGAGCAGAACGGGGGC 6337 ||||| ||| ||||||||||||||||||| | ||||||||||||||||||||| || || Sbjct 10 CCGCGTAGGCGCTCGTTGGTCCAGCAGAGGCGGCCGCCCTTGCGCGAGCAGAATGGCGGT 69 Query 6338 AGCACATCAAGCAGATGCTCGTCAGGGGGGTCCGCATCGATGGTGAAGATGCCCGGACAG 6397 || || ||| | |||||| |||||||| || || | ||| |||| ||||| ||| Sbjct 70 AG-GGGTCTAGCTGCGTCTCGTCCGGGGGGTCTGCGTCCACGGTAAAGA-CCCCGGGCAG 127 Query 6398 -AGTTCCTTGTCAAAATAATCGATTTTTGAGGATGCAT-CA--TCCAAGGCCATCTGCCA 6453 || | ||| || || || || || | || | | || || | ||| |||||| Sbjct 128 CAGGCGCGCGTCGAAGTAGTCTATCTT---GCATCCTTGCAAGTCTAGCGCCTGCTGCCA 184 Query 6454 CTCGCGGGCGGCCAGCGCTCGCTCGTAGGGGTTGAG-GGGCGGACCCCAGGGCAT-GGGA 6511 |||||||||| ||||| |||||||| |||||||| ||| |||||||| ||||| ||| Sbjct 185 TGCGCGGGCGGCAAGCGCGCGCTCGTATGGGTTGAGTGGGGGGACCCCATGGCATGGGGG 244 Query 6512 TGAGTGAGGGCGGAGGCGTACATGCCGC-AGATGTCGTAGACATAGA-TGGGCTCCGAGA 6569 || ||||| ||||||||||||||||||| | |||||||| || |||| |||||| || Sbjct 245 TGGGTGAGCGCGGAGGCGTACATGCCGCAAAATGTCGTAAACGTAGAGGGGGCTCTCTGA 304 Query 6570 GGATGCCGATGTAGGTGGGATAACAGCGCCCCCCGCGGATGCTGGCGCGCACGTAGTCAT 6629 | || || | || || || || || | || |||||||||||||| |||||||| || | Sbjct 305 GTATTCCAAGATATGTAGGGTAGCATCTTCCACCGCGGATGCTGGCNCGCACGTAATCGT 364 Query 6630 ACAACTCGTG-CGAGGGG-GCCAAGAAGG--CGGGG-CCGAGATTGGTGCGCTGGGGC 6682 | | ||||| ||||||| ||| || ||| ||||| ||||| || ||| |||||| Sbjct 365 ATAGTTCGTGCCGAGGGGAGCCGAGGAGGTTCGGGGACCGAGGTT--TGCCTTGGGGC 420 >seq169466 Length=306 Score = 170 bits (188), Expect = 4e-38 Identities = 204/275 (74%), Gaps = 2/275 (1%) Strand=Plus/Minus Query 14089 AATGGCGTGCTGGAGAGCGATA-TCGGAGTCAAGTTTGACAGCAGAAATTTCAAGCTGGG 14147 || || || ||||| ||||| |||| || |||||||||| | | || |||| ||||| Sbjct 294 AACGGGGTTCTGGAAAGCGACNGTCGGGGTAAAGTTTGACACCCGCAACTTCAGACTGGG 235 Query 14148 CTGGGACCCGGTGACCAAGCTGGTGATGCCAGGG-GTCTACACCTACGAGGCCTTCCACC 14206 | ||||| || || || || ||||| | || || || |||| |||||||| | Sbjct 234 GTTTGACCCAGTCACTGGTCTTGTCATGCCCTAGAGTATATACAAACGAAGCCTTCCATC 175 Query 14207 CGGACGTGGTGCTGCTGCCGGGCTGCGGGGTGGACTTCACCGAGAGCCGCCTGAGCAACC 14266 | ||| | | ||||||||| |||||||||||||||| | ||||||||||||||| Sbjct 174 CAGACATCATTTTGCTGCCGGATCCCGGGGTGGACTTCACCCACAGCCGCCTGAGCAACT 115 Query 14267 TCCTGGGCATTCGCAAGAAGCAACCTTTCCAAGAGGGCTTCAGAATCATGTATGAGGATC 14326 | ||||||| |||||| |||||| ||||| |||||||| || |||| || || || | Sbjct 114 TGTTGGGCATCCGCAAGCGGCAACCCTTCCAGGAGGGCTTTAGGATCACCTACGATGACC 55 Query 14327 TAGAAGGTGGCAACATCCCCGCCCTCCTTGATGTG 14361 | || ||||| ||||| ||||| || | |||||| Sbjct 54 TGGAGGGTGGTAACATTCCCGCACTGTTGGATGTG 20 >seq170248 Length=157 Score = 123 bits (136), Expect = 6e-24 Identities = 121/156 (78%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 10872 GAGGAGCCCGAGGAGATGCGCGACTGCCGGTTTCGGGCGGGCAGGGAGCTGCGCGAGGGC 10931 |||||||||||||||||||| || | ||| | || || | |||||||| | ||| Sbjct 156 GAGGAGCCCGAGGAGATGCGGGATCGAAAGTTCCACGCAGGGCGCGAGCTGCGGCATGGC 97 Query 10932 CTGGACCGCCAGCGCGTGCTGCGCGACGAGGATTTCGAGCCGAACGAGCAGACGGGGATC 10991 ||| | ||| |||| |||||||||| ||||| || ||||| ||| || || ||||| Sbjct 96 CTGAATCGCGAGCGGTTGCTGCGCGAGGAGGACTTTGAGCCCGACGCGCGAACCGGGATT 37 Query 10992 AGCCCCGCGCGCGCTCACGTGGCGGCGGCCAACCTG 11027 || ||||||||||| ||||||||||| ||| ||||| Sbjct 36 AGTCCCGCGCGCGCACACGTGGCGGCCGCCGACCTG 1 >seq170088 Length=938 Score = 80.6 bits (88), Expect = 6e-11 Identities = 83/105 (79%), Gaps = 4/105 (4%) Strand=Plus/Minus Query 10917 GAGCTGCGCGAGGGCCTGGAC-CGCCAGCGCGTGCTGCGCGACGAGGATTTCGAGCC--G 10973 |||||||| | |||||| | ||| |||| |||||||||| ||||| || ||||| | Sbjct 105 GAGCTGCGGCATGGCCTGAAATCGCGAGCGGTTGCTGCGCGAGGAGGACTTTGAGCCCCG 46 Query 10974 AACGAGCAGACG-GGGATCAGCCCCGCGCGCGCTCACGTGGCGGC 11017 |||| || || ||||| || ||||||||||| ||||||||||| Sbjct 45 AACGCGCGAACCCGGGATTAGTCCCGCGCGCGCACACGTGGCGGC 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 111738627476000