Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Serinus_20canaria_20[refseq_20GCF_5F000534875.1_202014-01-15] 304,400 sequences; 1,152,100,110 total letters Query= NC_011203.1 Length=35343 Score E Sequences producing significant alignments: (Bits) Value seq171425 161 2e-35 seq169466 147 5e-31 seq170248 80.6 6e-11 >seq171425 Length=537 Score = 161 bits (178), Expect = 2e-35 Identities = 268/378 (71%), Gaps = 17/378 (4%) Strand=Plus/Plus Query 6327 CCTCGGAGGGGCTCATTGGTCCAGCAGAGTCGACCTCCTTTTCTTGAACAGAAAgggggg 6386 || || ||| |||| |||||||||||||| || || || || | || ||||| || || Sbjct 10 CCGCGTAGGCGCTCGTTGGTCCAGCAGAGGCGGCCGCCCTTGCGCGAGCAGAATGGCGGT 69 Query 6387 agggggTCTAGCATGAACTCATCAGGGGGGTCCGCATCTATGGTAAATATTCCCGGTAGC 6446 ||||| |||||| ||| || |||||||| || || | |||||| | || || ||| Sbjct 70 AGGGG-TCTAGCTGCGTCTCGTCCGGGGGGTCTGCGTCCACGGTAAAGACCCCGGGCAGC 128 Query 6447 AAATCTTTGTCAAAATAGCTGATGGTGGCGGGATCATC-CAAG------GTCATCTGCCA 6499 | ||| || ||| || || ||| | |||| | | |||||| Sbjct 129 AGGCGCGCGTCGAAGTAGTCTATCTTGC----ATCCTTGCAAGTCTAGCGCCTGCTGCCA 184 Query 6500 TTCTCGAACTGCCAGCGCGCGCTCATAGGGGTTAAGAGGGGTG-CCCCAGGGCATGGGG- 6557 | | || | || ||||||||||| || ||||| || |||| | ||||| ||||||||| Sbjct 185 TGCGCGGGCGGCAAGCGCGCGCTCGTATGGGTTGAGTGGGGGGACCCCATGGCATGGGGG 244 Query 6558 TGGGTGAGCGCGGAGGCATACATGCCAC-AGATATCGTAGACATAGA-GGGGCTCTTCGA 6615 ||||||||||||||||| |||||||| | | || ||||| || |||| |||||||| || Sbjct 245 TGGGTGAGCGCGGAGGCGTACATGCCGCAAAATGTCGTAAACGTAGAGGGGGCTCTCTGA 304 Query 6616 GGATGCCGATGTAAGTGGGATAACATCGCCCCCCTCTGATGCTTGCTCGCACATAGTCAT 6675 | || || | || || || || |||| || || | |||||| || ||||| || || | Sbjct 305 GTATTCCAAGATATGTAGGGTAGCATCTTCCACCGCGGATGCTGGCNCGCACGTAATCGT 364 Query 6676 AGAGTTCATG-TGAGGGG 6692 | ||||| || |||||| Sbjct 365 ATAGTTCGTGCCGAGGGG 382 >seq169466 Length=306 Score = 147 bits (162), Expect = 5e-31 Identities = 216/302 (72%), Gaps = 3/302 (1%) Strand=Plus/Minus Query 14518 GCAGACAG-AATGGAGTGCTGGAAAGTGACATT-GGTGTTAAGTTTGACACTAGAAATTT 14575 |||| ||| || || || |||||||| ||| | || || ||||||||||| | || || Sbjct 303 GCAGGCAGGAACGGGGTTCTGGAAAGCGACNGTCGGGGTAAAGTTTGACACCCGCAACTT 244 Query 14576 CAGGCTCGGGTGGGACCCCGAAACTAAGTTGATTATGCCAG-GTGTCTACACTTATGAGG 14634 ||| || |||| ||||| | ||| | | ||||| | || || || | || | Sbjct 243 CAGACTGGGGTTTGACCCAGTCACTGGTCTTGTCATGCCCTAGAGTATATACAAACGAAG 184 Query 14635 CATTCCATCCTGACATTGTATTGCTGCCTGGTTGCGGGGTAGACTTTACTGAAAGCCGAC 14694 | |||||||| ||||| | |||||||| | | |||||| ||||| || | ||||| | Sbjct 183 CCTTCCATCCAGACATCATTTTGCTGCCGGATCCCGGGGTGGACTTCACCCACAGCCGCC 124 Query 14695 TTAGCAACTTGCTTGGCATCAGGAAGAGACATCCATTCCAGGAGGGTTTCAAAATCATGT 14754 | ||||||||| | |||||| | ||| | || || ||||||||||| || | |||| | Sbjct 123 TGAGCAACTTGTTGGGCATCCGCAAGCGGCAACCCTTCCAGGAGGGCTTTAGGATCACCT 64 Query 14755 ATGAAGATCTTGAAGGGGGTAATATTCCTGCCCTTTTGGATGTCACTGCCTATGAGGAAA 14814 | || || || || || ||||| ||||| || || |||||||| ||||| ||| || Sbjct 63 ACGATGACCTGGAGGGTGGTAACATTCCCGCACTGTTGGATGTGGACGCCTACCAGGCAA 4 Query 14815 GC 14816 || Sbjct 3 GC 2 >seq170248 Length=157 Score = 80.6 bits (88), Expect = 6e-11 Identities = 113/156 (72%), Gaps = 2/156 (1%) Strand=Plus/Minus Query 11136 GAGGAGCCAGAGGAGATGCGAGCATCTCGATTTA-ACGCGGGTCGCGAGCTGCGCCACGG 11194 |||||||| ||||||||||| | ||| | || |||| || ||||||||||| || || Sbjct 156 GAGGAGCCCGAGGAGATGCGGG-ATCGAAAGTTCCACGCAGGGCGCGAGCTGCGGCATGG 98 Query 11195 TCTGGATCGAAGACGGGTGCTGCAAGACGAGGATTTTGAGGTCGATGAAGTCACAGGGAT 11254 ||| |||| ||| |||||| || ||||| |||||| ||| | || ||||| Sbjct 97 CCTGAATCGCGAGCGGTTGCTGCGCGAGGAGGACTTTGAGCCCGACGCGCGAACCGGGAT 38 Query 11255 CAGCCCAGCTAGGGCACATGTGGCCGCGGCCAACCT 11290 || || || | ||||| ||||| || ||| |||| Sbjct 37 TAGTCCCGCGCGCGCACACGTGGCGGCCGCCGACCT 2 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 112567620004000