Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Serinus_20canaria_20[refseq_20GCF_5F000534875.1_202014-01-15] 304,400 sequences; 1,152,100,110 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq29 114 1e-20 seq23300 109 5e-19 seq77 100 3e-16 >seq29 Length=9066916 Score = 114 bits (126), Expect = 1e-20 Identities = 144/198 (73%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || |||||||| || || ||||| || | || ||| ||| || ||||| || ||| Sbjct 5719822 GTTGACTCTTTCTGGATGTTGTAGTCAGAGAGAGTACGACCATCTTCCAGCTGCTTGCCA 5719763 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 ||| ||||||| | ||||||||| ||||| ||||||||||||||| ||| || ||| Sbjct 5719762 GCGAAGATCAACCTCTGCTGATCTGGAGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTC 5719703 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | |||| |||||| | ||| || || | ||| | || || || ||||| || Sbjct 5719702 ACATTCTCGATGGTGTCACTGGGCTCCACCTCAAGGGTGATAGTCTTTCCAGTCAGGGTC 5719643 Query 127097 TTTACAAAAATCTGCATG 127114 || ||||| ||||||||| Sbjct 5719642 TTCACAAAGATCTGCATG 5719625 Score = 104 bits (114), Expect = 2e-17 Identities = 152/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 126899 CGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAA 126958 |||| ||||| || | || || || || || || |||||||| || ||||| | Sbjct 5720068 CGCAGCACCAGGTGCAGGGTGGATTCCTTCTGGATGTTGTAATCTGACAGGGTGCGCCCA 5720009 Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018 || || ||||| || ||||| |||||| | |||||| || || || |||||||||||| Sbjct 5720008 TCCTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATGCCCTCCTTG 5719949 Query 127019 TCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACC 127078 ||| ||| || ||| | | |||| |||||| | ||| || || | ||| | Sbjct 5719948 TCCTGGATCTTGGCCTTCACATTCTCGATGGTGTCACTGGGCTCAACCTCCAGGGTGATG 5719889 Query 127079 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || ||||| ||||| || || ||||| |||||||| Sbjct 5719888 GTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 5719854 >seq23300 Length=271 Score = 109 bits (120), Expect = 5e-19 Identities = 153/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 126899 CGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAA 126958 |||| ||||| || | || || || || || || |||||||| || || ||| | Sbjct 221 CGCAGCACCAGGTGCAGGGTGGATTCCTTCTGGATGTTGTAATCTGACAGGGTACGACCA 162 Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018 || || ||||| || || || |||||| | |||||| ||||| || |||||||||||| Sbjct 161 TCTTCCAGCTGCTTCCCTGCAAAGATCAGCCTCTGCTGGTCGGGGGGAATGCCCTCCTTG 102 Query 127019 TCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACC 127078 ||| ||| || ||| | | || | |||||| | ||||||||| | ||| | Sbjct 101 TCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCGACTTCCAGGGTGATG 42 Query 127079 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || ||||| ||||| || || ||||| |||||||| Sbjct 41 GTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 7 >seq77 Length=1106213 Score = 100 bits (110), Expect = 3e-16 Identities = 109/145 (75%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 146664 CTCGTCCTTGTCGCAATACTGCACAATCTCGGCGCAGAGGTTGCTGCACTTGATGATGCC 146723 |||||||||| | |||| ||||||||| | ||| ||||||||||| |||||| |||| Sbjct 1101090 CTCGTCCTTGCTGGTGTACTCCACAATCTCAGTGCACAGGTTGCTGCATTTGATGGTGCC 1101031 Query 146724 CAAAtttttttGGTTACTAAACTTGTTGCAGGGGTCCTTGTAGAGCATGTACGGTCCCCC 146783 || || | ||||| || | ||||||| | |||||||||||||||||| || || Sbjct 1101030 CAGGTTCTGCTGGTTGCTCTTCCTGTTGCAAGAGTCCTTGTAGAGCATGTAGGGGGTGCC 1100971 Query 146784 GGTTTCGACATTGGTCTCGACGATG 146808 || ||| | || ||||| |||| Sbjct 1100970 AGTCTCGGTCTGGGACTCGATGATG 1100946 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 473691519456000