Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Serinus_20canaria_20[refseq_20GCF_5F000534875.1_202014-01-15] 304,400 sequences; 1,152,100,110 total letters Query= NC_012783.2 Length=226205 Score E Sequences producing significant alignments: (Bits) Value seq10 167 3e-36 seq23 114 2e-20 >seq10 Length=27271039 Score = 167 bits (184), Expect = 3e-36 Identities = 217/300 (72%), Gaps = 0/300 (0%) Strand=Plus/Minus Query 8880 GGAACGCGGCCAACGGACATCCCTTCACATTGGCACAAATGAGGGACTGAATGGTTGCGG 8939 |||| || | || ||||| || ||||| ||| || ||||| ||| | || || | Sbjct 2972491 GGAAGGCAGTGAAGGGACAGCCTTTCACGTTGTTGCAGATGAGCTTCTGCAGGGAGGCCG 2972432 Query 8940 TTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGGG 8999 | || | |||||| || || || | || || ||||||||||| ||||||||| | |||| Sbjct 2972431 TGTTGATGATGTCGAAGCCCACCTTGCCCCCAAAGGTGCTGGGCTTCCAGTACTCGGGGG 2972372 Query 9000 AGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATGATGC 9059 |||||||| |||| |||| ||||| |||| ||| ||||| || |||| ||| | ||| Sbjct 2972371 AGCAGATGGCGTTGCCCATCAGCCCCTTCAGGGAGAACGGTGCTCCCATCTCCACCATGG 2972312 Query 9060 TCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGTTCGA 9119 |||| || |||||||| ||||| || || || || || | | ||| | ||| || || | Sbjct 2972311 TCTCGCCAAAGATGGCCCCGGGCCGGGGCTTCTCCACCAGCAGGCCTGGGTACAGCTCCA 2972252 Query 9120 CAGCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCACCTACAA 9179 || |||| ||| || || || | |||| ||| || || ||||| || || ||| ||| Sbjct 2972251 TGGCATCGATGTCCCCGTACAGCTCCTCCAGCTCCGCTGCCATCTCTTTTTCTCCTGCAA 2972192 Score = 136 bits (150), Expect = 6e-27 Identities = 168/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 9727 ATTAGACGAGTGGTTTGAAACAACTGCTCGTCACCCCATTCCGGGTGTTCGTGTTTGAGA 9786 || || || | ||| || || | ||||||||| |||| || ||||| | ||| ||||| Sbjct 2970554 ATGAGCCGGGCGGTCTGGAAGAGCTGCTCGTCGTCCCACTCGGGGTGCTGGTGCTTGAGC 2970495 Query 9787 ACATCGCAGACCCTGTTGTGTTCTCTCAGCCATATGGTGGCGTACATCATTAAACCCGGC 9846 || |||||||| | |||||| || | |||||| || |||||||||||||| | || ||| Sbjct 2970494 ACGTCGCAGACGCGGTTGTGCTCGCGCAGCCAGATCGTGGCGTACATCATGAGCCCGGGC 2970435 Query 9847 ACTAAACCAAACACTTCATTCCCCACTGCAAAGCGCAGATCATCGGGCACTTCGGGCGCA 9906 || | || ||||| || | |||||| | |||||||| | |||||||| | ||| | Sbjct 2970434 ACCAGCCCGAACACCTCCTGCCCCACGGAGAAGCGCAGGTGCTCGGGCACGTGGGGTGGG 2970375 Query 9907 TACAGCATATGCACCTGGGTCTCTTTGACGGTGGGGGGATACATTTCACC 9956 |||||||| | |||| || || || || || || ||||| || || Sbjct 2970374 TACAGCATCTCTGCCTGCGTGTCCCGCACCGTCGGAGGGTACATCTCTCC 2970325 Score = 120 bits (132), Expect = 4e-22 Identities = 171/239 (72%), Gaps = 4/239 (2%) Strand=Plus/Minus Query 9453 GAACGATTCAACTAATTGGGCTATTCCGTGCTTGATGAGGATGGAATTGTTGTAAACGAA 9512 ||| |||| || | |||| || |||||||| | | |||||| |||||||||| ||| Sbjct 2971731 GAAAGATTTGACCATATGGGATAGTCCGTGCTCCAGCATGATGGAGTTGTTGTAAAGGAA 2971672 Query 9513 GTGTTCGTAACCATACTTCGCGTCGCCTATGCGAAAATCATCAGGCAACAGAGAATGCCA 9572 || | | | |||| | ||| || | || || |||| ||| | ||||| Sbjct 2971671 CTGCTGGAAGGTGTACTCCTGGTCATGGATCTGGAAGGTGTCGGGCAGCAGCGGGTGCCA 2971612 Query 9573 GCGGTAGAGGGTATTGAACTCGGCCGCTATTCGGTTCTGGTACTGAAA--GGCGGTACCG 9630 | |||| ||||| ||||||||||| || || |||||||||||||| || ||| | Sbjct 2971611 GTGGTACAGGGTGTTGAACTCGGCTGCGATGCGGTTCTGGTACTGGAACTTCTGGT--TG 2971554 Query 9631 AACAGTAACTCCGGGTCAAAGATTAGCTGGAAGTGGTACCCGCTGAGTTGCTGGACATA 9689 ||||| | ||| |||||||| | |||| |||||||||||| || || ||||| ||||| Sbjct 2971553 AACAGCAGCTCAGGGTCAAACTTCAGCTTGAAGTGGTACCCACTCAGGTGCTGCACATA 2971495 >seq23 Length=11135842 Score = 114 bits (126), Expect = 2e-20 Identities = 203/296 (69%), Gaps = 0/296 (0%) Strand=Plus/Plus Query 8880 GGAACGCGGCCAACGGACATCCCTTCACATTGGCACAAATGAGGGACTGAATGGTTGCGG 8939 ||||||| | |||| || |||||| ||| || | ||| ||| | || ||| | Sbjct 1585592 GGAACGCCACGTACGGGCACTTCTTCACGTTGAGGCACACGAGCTTCTGCAGGGATGCCG 1585651 Query 8940 TTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGGG 8999 | ||||| || || || || | || || ||||| ||||||||||||||| | || | Sbjct 1585652 TCTTCACAATCTCAAAGCCAGTTGCTCCACCAAAGGTACTGGGTTTCCAGTACTCTGGAG 1585711 Query 9000 AGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATGATGC 9059 |||||||| || | | ||||| |||| |||||| ||||| || | ||| | |||| Sbjct 1585712 AGCAGATGGGATTTCCAAAAAGCCCCTTCAGGGAAAATGGAGCTCCGATCTCCACCATGC 1585771 Query 9060 TCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGTTCGA 9119 | || || || ||| || ||| | ||||| || | | ||||| | ||| | || | Sbjct 1585772 TTTCCCCAAAAATGCCATTGGGTTGGGGTTTCTCCAGCAGCAAGCCTGGGTAAAACTCCA 1585831 Query 9120 CAGCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCACCT 9175 ||| || | ||| ||||| || |||||| ||| || || |||| | ||| ||| Sbjct 1585832 GAGCATCAATGTCTCCATACAGCTCTTCCAGCTCTGCTGCCTTCTCTTCCTCTCCT 1585887 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 720974214960000