Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Serinus_20canaria_20[refseq_20GCF_5F000534875.1_202014-01-15] 304,400 sequences; 1,152,100,110 total letters Query= NC_012959.1 Length=34920 Score E Sequences producing significant alignments: (Bits) Value seq171425 201 3e-47 seq169466 165 2e-36 seq170248 120 7e-23 >seq171425 Length=537 Score = 201 bits (222), Expect = 3e-47 Identities = 306/418 (73%), Gaps = 20/418 (5%) Strand=Plus/Plus Query 6284 CCGCGCAGGGGCTCGTTAGTCCAGCAGAGGCGCCCGCCCTTGCGCGAGCAAAAAGGTGGT 6343 ||||| ||| ||||||| |||||||||||||| ||||||||||||||||| || || ||| Sbjct 10 CCGCGTAGGCGCTCGTTGGTCCAGCAGAGGCGGCCGCCCTTGCGCGAGCAGAATGGCGGT 69 Query 6344 AACACATCAAGCAAATGCTCGTCAGGGGGGTCCGCATCGATGGTAAAGATGCCCGGACAG 6403 | || ||| |||||| |||||||| || || | |||||||| ||||| ||| Sbjct 70 -AGGGGTCTAGCTGCGTCTCGTCCGGGGGGTCTGCGTCCACGGTAAAGA-CCCCGGGCAG 127 Query 6404 -AGTTCCTTGTCAAAATAATCAATTTTTAAGGATGCAT-CA--TCCAAGGCCATTTGCCA 6459 || | ||| || || || || || | || | | || || | ||| ||||| Sbjct 128 CAGGCGCGCGTCGAAGTAGTCTATCTT---GCATCCTTGCAAGTCTAGCGCCTGCTGCCA 184 Query 6460 GTTGCGGGCGGCCAGGGCTCGCTCGCAGGGGTTCAG-GGGCGGACCCCAGGGCAT-GGGA 6517 ||||||||| || || |||||| | ||||| || ||| |||||||| ||||| ||| Sbjct 185 TGCGCGGGCGGCAAGCGCGCGCTCGTATGGGTTGAGTGGGGGGACCCCATGGCATGGGGG 244 Query 6518 TGCGTAAGCGCGGAGGCGTACATGCCGC-AGATGTCATACACATAGA-TGGGCTCCGAGA 6575 || || |||||||||||||||||||||| | ||||| || || |||| |||||| || Sbjct 245 TGGGTGAGCGCGGAGGCGTACATGCCGCAAAATGTCGTAAACGTAGAGGGGGCTCTCTGA 304 Query 6576 GGATGCCGATGTAGGTGGGATAACAGCGCCCCCCGCGGATGCTGGCGCGCACGTAGTCAT 6635 | || || | || || || || || | || |||||||||||||| |||||||| || | Sbjct 305 GTATTCCAAGATATGTAGGGTAGCATCTTCCACCGCGGATGCTGGCNCGCACGTAATCGT 364 Query 6636 ACAACTCATG-CGA-GGGTGCCAAGAAGG--CGGGG-CCAAGATTGGTGCGCTGGGGC 6688 | | || || ||| ||| ||| || ||| ||||| || || || ||| |||||| Sbjct 365 ATAGTTCGTGCCGAGGGGAGCCGAGGAGGTTCGGGGACCGAGGTT--TGCCTTGGGGC 420 >seq169466 Length=306 Score = 165 bits (182), Expect = 2e-36 Identities = 197/265 (74%), Gaps = 2/265 (1%) Strand=Plus/Minus Query 14035 AATGGCGTGCTGGAGAGCGATATT-GGAGTCAAGTTTGACAGCAGAAATTTCAAGCTGGG 14093 || || || ||||| ||||| | || || |||||||||| | | || |||| ||||| Sbjct 294 AACGGGGTTCTGGAAAGCGACNGTCGGGGTAAAGTTTGACACCCGCAACTTCAGACTGGG 235 Query 14094 CTGGGACCCGGTAACTAAGCTGGTGATGCCGGGG-GTCTACACCTACGAGGCCTTCCACC 14152 | ||||| || ||| || || ||||| | || || || |||| |||||||| | Sbjct 234 GTTTGACCCAGTCACTGGTCTTGTCATGCCCTAGAGTATATACAAACGAAGCCTTCCATC 175 Query 14153 CGGACGTGGTGCTGCTGCCGGGCTGCGGGGTGGACTTCACCGAGAGCCGCCTGAGCAACC 14212 | ||| | | ||||||||| |||||||||||||||| | ||||||||||||||| Sbjct 174 CAGACATCATTTTGCTGCCGGATCCCGGGGTGGACTTCACCCACAGCCGCCTGAGCAACT 115 Query 14213 TCCTGGGCATTCGCAAGAAGCAACCTTTCCAAGAGGGTTTCAGGATCATGTATGAGGATC 14272 | ||||||| |||||| |||||| ||||| ||||| || ||||||| || || || | Sbjct 114 TGTTGGGCATCCGCAAGCGGCAACCCTTCCAGGAGGGCTTTAGGATCACCTACGATGACC 55 Query 14273 TAGAAGGCGGCAACATCCCCGCACT 14297 | || || || ||||| |||||||| Sbjct 54 TGGAGGGTGGTAACATTCCCGCACT 30 >seq170248 Length=157 Score = 120 bits (132), Expect = 7e-23 Identities = 120/156 (77%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 10805 GAGGAGCCCGAGGAGATGCGCGACTGCCGGTTTCGGGCGGGCAGGGAGCTGCGCGAGGGC 10864 |||||||||||||||||||| || | ||| | || || | |||||||| | ||| Sbjct 156 GAGGAGCCCGAGGAGATGCGGGATCGAAAGTTCCACGCAGGGCGCGAGCTGCGGCATGGC 97 Query 10865 CTGGACCGCCAGCGCGTGCTGCGCGACGATGATTTCGAGCCGAACGAGCAGACGGGGATC 10924 ||| | ||| |||| |||||||||| || || || ||||| ||| || || ||||| Sbjct 96 CTGAATCGCGAGCGGTTGCTGCGCGAGGAGGACTTTGAGCCCGACGCGCGAACCGGGATT 37 Query 10925 AGCCCCGCGCGCGCGCACGTGGCGGCGGCCAACCTG 10960 || ||||||||||| ||||||||||| ||| ||||| Sbjct 36 AGTCCCGCGCGCGCACACGTGGCGGCCGCCGACCTG 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 111218912929600