Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Serinus_20canaria_20[refseq_20GCF_5F000534875.1_202014-01-15] 304,400 sequences; 1,152,100,110 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq4 255 7e-63 >seq4 Length=50638526 Score = 255 bits (282), Expect = 7e-63 Identities = 1023/1595 (64%), Gaps = 28/1595 (2%) Strand=Plus/Minus Query 6568 TTCATCTTCATCTTTATACTTTTCCGCATCTTGGACCATCTTTTCAATGTCTTCTTTCGA 6627 |||||| || |||| ||||| || || ||||| ||||| |||||||| || || Sbjct 6519713 TTCATCCTCTGCTTTGTACTTCTCTGCTTCTTGCACCATACGGTCAATGTCGTCCTTACT 6519654 Query 6628 TAATCTCCCCTTATCATTCGTAATCGTAATCTTTTCGGATTTACCCGAGGCCTTATCTTC 6687 | | ||||| ||||| || || || ||||| | ||||||| | ||| || | Sbjct 6519653 GAGGCGACCCTTGTCATTGGTGATGGTGATCTTGTTCTCCTTACCCGTGCTCTTGTCCAC 6519594 Query 6688 AGCACTTACATTCAAAATACCATTTGCATCAACATCGAACCTTACATTAATTTGTGGTGT 6747 |||||| || |||| |||||||| ||||| | || || | || | || || || Sbjct 6519593 AGCACTGACGTTCAGGATACCATTGGCATCGATGTCAAAAGTGACCTCGATCTGGGGGAC 6519534 Query 6748 ACCCCTCGGTGCGGCTGGAATACCCGTTAAATCAAATGTACCAAGTAAACTGTTATCCGT 6807 ||||| ||||| | || || || |||| ||||| | || || || |||||||| | Sbjct 6519533 TCCCCTGGGTGCTGGGGGGATGCCTGTTAGGTCAAACTTGCCCAGCAAGTTGTTATCCCT 6519474 Query 6808 CGCCTTCTTACGTTCACCTTCATAGACTTTAATTGTCACCGCAGGT-TGATTATCTTGTG 6866 | | | | ||||| ||||| || | | || || | | || || ||| Sbjct 6519473 TGTCATAGCTCTCTCACCCTCATACACCTGGACCAGGAC-GCTGCTCTGGTTGTCTGAGT 6519415 Query 6867 CCGTTGAGAAGATTTGTTCTTTCTTAGATGGAATCGTCGTATTTCTCGGAATAACCGGGG 6926 || | |||| | || || || | || || || || || | | || | | | Sbjct 6519414 AGGTGGTGAAGGTCTGAGTTTGTTTGGTGGGGATGGTGGTGTTGCGCTTGATGAGAGCAG 6519355 Query 6927 TCATAATACCACCCATAGTTTCGAGTCCAAGAGACAGAGGTGTCACGTCCAAGAGTAACA 6986 |||| | || || || |||| || || |||||||| || || |||| | | || Sbjct 6519354 TCATCACTCCTCCAGCTGTCTCGATGCCCAGGGACAGAGGGGTGACATCCAGCAACAGCA 6519295 Query 6987 GGTCTTGAACAGATTCGTTCCCTTCACCCGTTAAGATGGCGGCTTGGACCGTCGCCCCGT 7046 | || || ||| || | || ||| | | ||| || ||||| || | || || | Sbjct 6519294 GATCCTGGACATTCTCAGACTTGTCTCCCATGAGGATAGCTGCTTGTACGGCAGCACCAT 6519235 Query 7047 ATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAATAATCCG 7106 | || || |||||||| ||||| || | || || |||||||| || || || ||||| Sbjct 6519234 AAGCCACAGCCTCATCAGGGTTGATGCTCTTGTTGAGTTCTTTGCCATTGAAGAAATCCT 6519175 Query 7107 ATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATTTCATTCA 7166 | || | || || || ||||| || || || ||||| |||| || || || | | Sbjct 6519174 GCAGCAGCTTCTGGATCTTGGGGATCCGGGTAGAGCCACCCACCAGCACAATCTCCTGGA 6519115 Query 7167 CTTTCGATTTATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCATACATTTAC 7226 | || |||| ||| | || || || | || || || || |||| || Sbjct 6519114 TCTGGCCCTTGTCGAGCTTAGCATCACGCAGAGCCTTCTCCACCGGCTCCAGGGTGCCAC 6519055 Query 7227 GGAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAGAAATCAA 7286 |||| | ||| | || ||||||||||| ||||| |||||||| || ||||| |||| Sbjct 6519054 GGAAAAGGTCAGCATTGAGCTCCTCAAAACGGGCACGAGTAATGGAGGTGTAGAAGTCAA 6518995 Query 7287 CGCCGTCGTATAACGAATCAATTTCAATGGTTGTTTGTGCCGTCGAAGATAACGTTCGCT 7346 ||| || | | || ||||| |||||| | | |||| | || | || |||| Sbjct 6518994 TGCCCTCAAACAGAGAGTCAATCTCAATGCTGGCCTGTGTGGAGGAGCTGAGGGTGCGCT 6518935 Query 7347 TTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAAATATCTT 7406 |||| | |||||| || || || | || | | || || ||| || | ||| || Sbjct 6518934 TTGCCCTCTCACAAGCAGTGCGCAGCCGCCTCACCGCTCGTTTGTTGCCAGCAATGTCAC 6518875 Query 7407 TCTTATGTTTACGTTTAAACTCTTCAGAGAAGTGTCGAAGGAGTCTCGAATCGAAATCTT 7466 ||| || || || || || ||||| ||||| | | | || || || | Sbjct 6518874 GCTTGTGCTTGCGCTTGAATTCTTCCACAAAGTGGTTCACCATGCGGTTGTCAAAGTCCT 6518815 Query 7467 CACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAATGT 7526 | |||||||| || || || || || || | || || ||||| || || | || ||| Sbjct 6518814 CCCCACCCAAATGGGTGTCACCAGCTGTGGACTTTACCTCAAAAATCCCATCCTCGATGG 6518755 Query 7527 TTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTCGTATCGT 7586 | | | || ||||| || || || || |||| |||||| ||||| |||||| | || Sbjct 6518754 TAAGGATGGAGACATCGAAAGTGCCCCCTCCCAAGTCAAAGATGAGCACGTTCTTCTCTC 6518695 Query 7587 C------GTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAA 7640 | | | ||||| || || ||||| |||||||| || || || || ||||| | Sbjct 6518694 CAGCCCGGGTTCCTTTCTTGTCCAGGCCGTAAGCGATAGCGGCTGCAGTGGGCTCATTGA 6518635 Query 7641 TAATACG-AAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGC 7699 | ||||| | ||| || ||||| | || || | || || || || || || || || Sbjct 6518634 TGATACGCATCACA-TTGAGGCCTGTGATGGTGCCAGCGTCCTTGGTGGCCTGGCGCTGG 6518576 Query 7700 GAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATAC 7759 ||||| || ||||| || || || || | ||| || | || || || ||||| Sbjct 6518575 GAATCATTGAAGTACGCTGGCACTGTGATGACAGCATTTTGCACCTTGCACCCCAGATAG 6518516 Query 7760 GATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCAAAC 7819 | || || || || ||||| ||||| || ||||| || ||||| || | | | | Sbjct 6518515 GCCTCAGCAATCTCCTTCATCTTGGTGAGCACCATGGAGCTGATCTCCTCTG-GGAAGAA 6518457 Query 7820 TGT-TTCGTTTCACCGTTAAAATCAACTTCAATCATGGGTTTATCCGCAGCACCGGGGAT 7878 || ||| | || || || | || || | | | |||| || || | || | Sbjct 6518456 GGTCTTCATCTCCCCCTTGTACTCCACCTGCACCTTGGGCTT----GC--CTCCCTCATT 6518403 Query 7879 AACCTTA---TACGACCAATCTTTCATATCGTCTTGGACCTGT-TGGTCCGAAAACTTTC 7934 ||| | | | ||| | ||||| || || | |||| |||| | |||| | Sbjct 6518402 CACCACACGGAAAGGCCAGTGCTTCATGTCTGACTGCA-CTGTGGGGTCGTCATACTTGC 6518344 Query 7935 TTCCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCT 7994 ||||| || || || |||||||||| ||||| |||||||||| ||| ||||||| Sbjct 6518343 GGCCGATGAGGCGTTTGGCATCAAAAATGGTGTTGGTGGGGTTCATTGCTACCTGGTTCT 6518284 Query 7995 TCGCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGG-GTC 8053 | || || |||||||| || || || || || || ||||| || || | |||| || Sbjct 6518283 TGGCAGCATCCCCGATGAGCCGCTCCGTA---TCGGTGAACGCCACATA-GCTGGGTGTG 6518228 Query 8054 GTTCGATTCCCTTGGTCGTTCGCAATAATTTCTACGCGGTCGTTTTGCCAGACGCCGACG 8113 || || || || || ||||| || || || || || | ||| || |||| || ||| Sbjct 6518227 GTGCGGTTGCCCTGATCGTTGGCGATGATCTCCACCTTGCCGTGCTGGAAGACACCCACG 6518168 Query 8114 CACGAATACGTTGTTCCTAAATCAATACCGATTGC 8148 || || ||||| || || | || || ||||| || Sbjct 6518167 CAGGAGTACGTGGTGCCCAGGTCGATGCCGATCGC 6518133 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 632716119696000