Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Serinus_20canaria_20[refseq_20GCF_5F000534875.1_202014-01-15] 304,400 sequences; 1,152,100,110 total letters Query= NC_015225.1 Length=35499 Score E Sequences producing significant alignments: (Bits) Value seq171425 293 5e-75 seq169466 250 6e-62 seq169021 86.0 1e-12 >seq171425 Length=537 Score = 293 bits (324), Expect = 5e-75 Identities = 310/394 (79%), Gaps = 15/394 (4%) Strand=Plus/Plus Query 6311 CCGCGCAGGCGCTCGTTGGTCCAGCAGAGGCGCCCGCCCTTGCGCGAGCAGAAGGGGGGC 6370 ||||| |||||||||||||||||||||||||| |||||||||||||||||||| || || Sbjct 10 CCGCGTAGGCGCTCGTTGGTCCAGCAGAGGCGGCCGCCCTTGCGCGAGCAGAATGGCGGT 69 Query 6371 AGCACGTCGAGCTGGTCCTCGGGCGGCGGGTCGGCGTCCACGGTGAAGATGCCGGGCGGC 6430 || ||| ||||| |||| ||| ||||| ||||||||||| |||| |||||| || Sbjct 70 AG-GGGTCTAGCTGCGTCTCGTCCGGGGGGTCTGCGTCCACGGTAAAGACCCCGGGCAGC 128 Query 6431 AGGCGGGGGTTAAAGTAGTCAAT-GGGCGT--TTGTGAGTCGTCCAGGGCGCGCTGCCAG 6487 ||||| | || |||||||| || || | ||| | ||| || || ||||||| Sbjct 129 AGGCGCGCGTCGAAGTAGTCTATCTTGCATCCTTGCAA---GTCTAGCGCCTGCTGCCAT 185 Query 6488 TTCCGGGCGGCCAGCGCCCGCTCGTAGGGGTTGAG-CGGCGGCCCCCAGGGCAT-GGGGT 6545 |||||||| ||||| |||||||| |||||||| || || ||||| ||||| ||||| Sbjct 186 GCGCGGGCGGCAAGCGCGCGCTCGTATGGGTTGAGTGGGGGGACCCCATGGCATGGGGGT 245 Query 6546 GGGTGAGGGCCGAGGCGTACATGCCGC-AGATGTCGTAGACGTAGA-GGGGCTCCTCGAG 6603 ||||||| || |||||||||||||||| | |||||||| ||||||| ||||||| ||| Sbjct 246 GGGTGAGCGCGGAGGCGTACATGCCGCAAAATGTCGTAAACGTAGAGGGGGCTCTCTGAG 305 Query 6604 GACGCCGATGTAGGTGGGGTAGCAGCGGCCGCCGCGGATGCTGGCGCGCACGTAGTCGTA 6663 | || | || || |||||||| | || |||||||||||||| |||||||| ||||| Sbjct 306 TATTCCAAGATATGTAGGGTAGCATCTTCCACCGCGGATGCTGGCNCGCACGTAATCGTA 365 Query 6664 CATCTCGTG-CGAGGGG-GCC-AGCAGG-TCGGG 6693 | ||||| ||||||| ||| || ||| ||||| Sbjct 366 TAGTTCGTGCCGAGGGGAGCCGAGGAGGTTCGGG 399 >seq169466 Length=306 Score = 250 bits (276), Expect = 6e-62 Identities = 234/294 (80%), Gaps = 3/294 (1%) Strand=Plus/Minus Query 14234 GGCAG-AACGGGGTGCTGGAGAGCGACA-TCGGGGTGAAGTTCGACACGCGCAACTTCCG 14291 ||||| |||||||| ||||| |||||| ||||||| ||||| ||||| ||||||||| | Sbjct 300 GGCAGGAACGGGGTTCTGGAAAGCGACNGTCGGGGTAAAGTTTGACACCCGCAACTTCAG 241 Query 14292 GCTGGGCTGGGACCCCGTGACCAAGCTGGTCATGCCGG-GCGTGTACACCAACGAGGCCT 14350 ||||| | ||||| || || || |||||||| | || || || ||||| |||| Sbjct 240 ACTGGGGTTTGACCCAGTCACTGGTCTTGTCATGCCCTAGAGTATATACAAACGAAGCCT 181 Query 14351 TCCACCCGGACGTGGTGCTGCTGCCGGGCTGCGGGGTGGACTTCACGCAGAGCCGCCTGA 14410 |||| || ||| | | ||||||||| ||||||||||||||| || |||||||||| Sbjct 180 TCCATCCAGACATCATTTTGCTGCCGGATCCCGGGGTGGACTTCACCCACAGCCGCCTGA 121 Query 14411 GCAACCTGCTGGGCATCCGCAAGCGGCAACCCTTCCAGGAGGGCTTCCGCATCATGTACG 14470 ||||| || ||||||||||||||||||||||||||||||||||||| | |||| |||| Sbjct 120 GCAACTTGTTGGGCATCCGCAAGCGGCAACCCTTCCAGGAGGGCTTTAGGATCACCTACG 61 Query 14471 AGGACCTGGAGGGCGGCAACATCCCCGCGCTCCTGAACGTGAAGGCCTACGAGG 14524 | ||||||||||| || ||||| ||||| || || | ||| | |||||| ||| Sbjct 60 ATGACCTGGAGGGTGGTAACATTCCCGCACTGTTGGATGTGGACGCCTACCAGG 7 >seq169021 Length=202 Score = 86.0 bits (94), Expect = 1e-12 Identities = 64/75 (85%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 5960 TCGGCGCTCAGGGTGTCAGTTTCCACGAACGAGGAGGATTTGATGTTGACCTGCCCGGCG 6019 || ||||| || |||||||||||| ||||||||||||||||| || ||||| || ||| Sbjct 119 TCTGCGCTAAGATTGTCAGTTTCCAAAAACGAGGAGGATTTGATATTCACCTGGCCCGCG 178 Query 6020 GCGATGCCTTTGAGG 6034 | ||||||||||||| Sbjct 179 GTGATGCCTTTGAGG 193 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 113065015520800