Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Serinus_20canaria_20[refseq_20GCF_5F000534875.1_202014-01-15] 304,400 sequences; 1,152,100,110 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq29 143 6e-29 seq204287 140 7e-28 seq19 136 9e-27 seq23300 123 6e-23 >seq29 Length=9066916 Score = 143 bits (158), Expect = 6e-29 Identities = 167/224 (75%), Gaps = 6/224 (3%) Strand=Plus/Minus Query 194920 CTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTT 194979 ||||| | || |||||||| ||||| |||||||| || || ||||| || | ||||| Sbjct 5719846 CTGAGGCGCAGGACAAGGTGCAGAGTTGACTCTTTCTGGATGTTGTAGTCAGAGAGAGTA 5719787 Query 194980 CTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCT 195039 | |||||||| |||||||| || |||||||| | | || || |||||||||||||| Sbjct 5719786 CGACCATCTTCCAGCTGCTTGCCAGCGAAGATCAACCTCTGCTGATCTGGAGGAATGCCC 5719727 Query 195040 TCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCA 195096 || ||||| || || || ||| || ||||| |||||||| ||| ||||| ||| Sbjct 5719726 TCCTTGTCCTGGATCTTGGCCTTCACATTCTCGATGGTGTC---ACTGGGCTCCACCTCA 5719670 Query 195097 AGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||||| | |||||||| |||| || || || || | ||||| Sbjct 5719669 AGGGTGATAGTCTTTCCAGTCAGGGTCTTCACAAAGATCTGCAT 5719626 >seq204287 Length=600 Score = 140 bits (154), Expect = 7e-28 Identities = 166/224 (74%), Gaps = 6/224 (3%) Strand=Plus/Plus Query 194920 CTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTT 194979 ||||| | || |||||||| ||||| |||||||| || || ||||| || | || || Sbjct 299 CTGAGGCGCAGGACAAGGTGCAGAGTTGACTCTTTCTGGATGTTGTAGTCAGACAGGGTG 358 Query 194980 CTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCT 195039 | ||||||||| |||||||| || |||||||| || | || ||||| ||||| || ||| Sbjct 359 CGCCCATCTTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGGTCGGGAGGGATACCT 418 Query 195040 TCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTT---TCCACTTCA 195096 || ||||| || || || ||| || ||||| |||||||| ||| || || || Sbjct 419 TCCTTGTCCTGGATCTTGGCCTTCACATTCTCGATGGTGTC---ACTGGGCTCAACCTCC 475 Query 195097 AGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || | ||||| || |||| ||||||||||| | ||||| Sbjct 476 AGAGTGATGGTCTTGCCAGTCAGGGTTTTTACGAAGATCTGCAT 519 >seq19 Length=13664266 Score = 136 bits (150), Expect = 9e-27 Identities = 158/212 (75%), Gaps = 6/212 (3%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 |||||||| ||||| ||||| || || |||||||| || | || || | |||||||| Sbjct 12085116 ACAAGGTGCAGAGTTGACTCCTTCTGGATATTGTAGTCAGAGAGGGTGCGGCCATCTTCC 12085175 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || || ||||| || | || ||||| ||||| |||||||| |||||||| Sbjct 12085176 AGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGGATGCCTTCCTTGTCTTGG 12085235 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTC 195108 || || ||||| |||||||||||||| ||| ||| ||||| || || | ||| Sbjct 12085236 ATCTTGGCTTTGACATTCTCAATGGTGTC---ACTGGGTTCGACTTCCAGAGTGATGGTC 12085292 Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || |||| || || || || | ||||| Sbjct 12085293 TTGCCAGTCAGGGTCTTGACAAAGATCTGCAT 12085324 Score = 127 bits (140), Expect = 5e-24 Identities = 159/217 (73%), Gaps = 6/217 (3%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || || || || ||||| || || || || ||||| || | || || | ||||| || Sbjct 12085344 ACGAGATGCAGTGTGGATTCCTTCTGGATGTTGTAGTCAGAGAGGGTACGGCCATCCTCC 12085403 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || || ||||| || | || ||||| ||||| |||||||| |||||||| Sbjct 12085404 AGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGGATGCCTTCCTTGTCTTGG 12085463 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTC 195108 || || |||||| || ||||||||||| ||| || || |||||||| | ||| Sbjct 12085464 ATCTTGGCCTTGACATTTTCAATGGTGTC---ACTGGGCTCGACCTCAAGGGTGATGGTC 12085520 Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCATTTATG 195145 || || ||||| || || ||||| | ||||||| || Sbjct 12085521 TTGCCAGTCAAGGTCTTGACGAAGATCTGCATTTTTG 12085557 >seq23300 Length=271 Score = 123 bits (136), Expect = 6e-23 Identities = 163/225 (72%), Gaps = 6/225 (3%) Strand=Plus/Minus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 ||| || | || || ||||| || ||||| || || || || |||||||| | || || Sbjct 228 TCTCAGACGCAGCACCAGGTGCAGGGTGGATTCCTTCTGGATGTTGTAATCTGACAGGGT 169 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 | |||||||| |||||||| ||||| ||||| || | || ||||| || |||||||| Sbjct 168 ACGACCATCTTCCAGCTGCTTCCCTGCAAAGATCAGCCTCTGCTGGTCGGGGGGAATGCC 109 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTC 195095 || ||||| || || || ||| || |||||||||||||| ||| || ||||| Sbjct 108 CTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTC---ACTGGGCTCGACTTC 52 Query 195096 AAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||||| | ||||| || |||| || || || || | ||||| Sbjct 51 CAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 7 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1105154483074800