Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Serinus_20canaria_20[refseq_20GCF_5F000534875.1_202014-01-15] 304,400 sequences; 1,152,100,110 total letters Query= NC_015932.1 Length=31616 Score E Sequences producing significant alignments: (Bits) Value seq169466 136 8e-28 seq171425 120 6e-23 >seq169466 Length=306 Score = 136 bits (150), Expect = 8e-28 Identities = 177/241 (73%), Gaps = 9/241 (4%) Strand=Plus/Minus Query 13224 GGGCTAAAGTTTGACACACGCAACTTTATGCTAGGCTATGACCCAGAAACTAAGCTGGTG 13283 ||| ||||||||||||| |||||||| | || || | |||||||| ||| || || Sbjct 269 GGGGTAAAGTTTGACACCCGCAACTTCAGACTGGGGTTTGACCCAGTCACTGGTCTTGTC 210 Query 13284 ATGCCCGGG-GCCTACACCAATGAGGCTTTTCACCCGGACATAGT---GCTGAGCCCCGG 13339 |||||| | | || || || || || || || || ||||| | |||| |||| Sbjct 209 ATGCCCTAGAGTATATACAAACGAAGCCTTCCATCCAGACATCATTTTGCTG----CCGG 154 Query 13340 CTGC-GCTGTGGACTTTACCAACAGCCGCCTCAATAACTTTCTGGGCATTAGAAAGAGGC 13398 | | | |||||||| ||| |||||||||| | ||||| ||||||| | ||| ||| Sbjct 153 ATCCCGGGGTGGACTTCACCCACAGCCGCCTGAGCAACTTGTTGGGCATCCGCAAGCGGC 94 Query 13399 AGCCCTACCAGGAGGGCTTCATTATTGCCTATGATGACCTGCAGGGGGGAAACATTCCCG 13458 | |||| |||||||||||| | || |||| ||||||||| |||| || |||||||||| Sbjct 93 AACCCTTCCAGGAGGGCTTTAGGATCACCTACGATGACCTGGAGGGTGGTAACATTCCCG 34 Query 13459 C 13459 | Sbjct 33 C 33 >seq171425 Length=537 Score = 120 bits (132), Expect = 6e-23 Identities = 249/363 (69%), Gaps = 20/363 (6%) Strand=Plus/Plus Query 5915 CCCCGGAGGGGCTCGTTGGTCCAGCATAGCCTTCCGCCTTTTCTGGAACAAAATGGCGGC 5974 || || ||| |||||||||||||||| || | ||||| || | || || |||||||| Sbjct 10 CCGCGTAGGCGCTCGTTGGTCCAGCAGAGGCGGCCGCCCTTGCGCGAGCAGAATGGCGGT 69 Query 5975 AGGACGTCAAGATGGCTGTCTTCAGGGGGGTCGGCGTCGATGGTGAAAATGGCGGGCAGC 6034 ||| ||| || || | || || |||||||| ||||| | ||| || | |||||||| Sbjct 70 AGG-GGTCTAGCTGCGTCTCGTCCGGGGGGTCTGCGTCCACGGTAAAGACCCCGGGCAGC 128 Query 6035 AGCTCCGCGTCAAAATA-ACTAATTTGGGGACACTGTTGCA--TCTTGAGC------TCA 6085 || |||||| || || ||| ||| || ||||| ||| | || || Sbjct 129 AGGCGCGCGTCGAAGTAGTCTATCTTG----CATCCTTGCAAGTCTAGCGCCTGCTGCCA 184 Query 6086 TACGCCCGCATGGCCAGGGCCCTCTCATAGGGGTTGAGAGGGGCG--CCGGCGGGAAACG 6143 | ||| || ||| || || | ||| || |||||||| |||| | || || | | Sbjct 185 TGCGCGGGC--GGCAAGCGCGCGCTCGTATGGGTTGAGTGGGGGGACCCCATGGCATGGG 242 Query 6144 GATGGGTGAGGGCGCTCGCATACATGCCAC-AGATGTCATAAACAAACA-CGGGTTCTGC 6201 | |||||||| ||| || |||||||| | | ||||| ||||| | | ||| ||| Sbjct 243 GGTGGGTGAGCGCGGAGGCGTACATGCCGCAAAATGTCGTAAACGTAGAGGGGGCTCTCT 302 Query 6202 TAGAACGCCTATGTAAGTGGGGTAGCAGCGCCCCCCGCGGATGCTGGCGCGCACGTACTC 6261 || | || | || || |||||||| | || |||||||||||||| |||||||| || Sbjct 303 GAGTATTCCAAGATATGTAGGGTAGCATCTTCCACCGCGGATGCTGGCNCGCACGTAATC 362 Query 6262 ATA 6264 || Sbjct 363 GTA 365 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 100684330958400