Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Serinus_20canaria_20[refseq_20GCF_5F000534875.1_202014-01-15] 304,400 sequences; 1,152,100,110 total letters Query= NC_017825.1 Length=36711 Score E Sequences producing significant alignments: (Bits) Value seq171425 266 8e-67 seq169466 232 2e-56 seq170248 125 2e-24 >seq171425 Length=537 Score = 266 bits (294), Expect = 8e-67 Identities = 291/377 (77%), Gaps = 14/377 (4%) Strand=Plus/Plus Query 6357 CCGCGCAGGGGCTCGTTGGTCCAGCAGAGGCGGCCGCCCTTGCGCGAGCAGAAGGGGGGC 6416 ||||| ||| ||||||||||||||||||||||||||||||||||||||||||| || || Sbjct 10 CCGCGTAGGCGCTCGTTGGTCCAGCAGAGGCGGCCGCCCTTGCGCGAGCAGAATGGCGGT 69 Query 6417 AGAGGGTCCAGCATGACCTCGTCgggggggTCGGCATCGATGGTGAAGATGCCGGGCAGG 6476 || ||||| ||| |||||| |||||||| || || | ||| |||| |||||||| Sbjct 70 AG-GGGTCTAGCTGCGTCTCGTCCGGGGGGTCTGCGTCCACGGTAAAGACCCCGGGCAGC 128 Query 6477 AGATCGGGGTCGAAGTAGCTGATG--GAAG--TGGCCAGATCGTCCAGGGAAGCTTGCCA 6532 || | |||||||||| || | | | || || || || | ||||| Sbjct 129 AGGCGCGCGTCGAAGTAGTCTATCTTGCATCCTTGCAAG----TCTAGCGCCTGCTGCCA 184 Query 6533 TTCGCGCACGGCCAGCGCGCGCTCGTAGGGACTGAGGGGCGTG-CCCCAGGGCATGGGG- 6590 | |||| |||| |||||||||||||| || |||| || | | ||||| ||||||||| Sbjct 185 TGCGCGGGCGGCAAGCGCGCGCTCGTATGGGTTGAGTGGGGGGACCCCATGGCATGGGGG 244 Query 6591 TGGGTGAGCGCGGAGGCGTACATGCCGCAGA-TGTCGTAGACGTAGAGGGGCTCCTC-GA 6648 ||||||||||||||||||||||||||||| | ||||||| ||||||||||| ||| || Sbjct 245 TGGGTGAGCGCGGAGGCGTACATGCCGCAAAATGTCGTAAACGTAGAGGGGGCTCTCTGA 304 Query 6649 GGATGCCGATGTAGGTGGGGTAGCAGCGCCCCCCGCGGATGCTGGCGCGCACGTAGTCAT 6708 | || || | || || |||||||| | || |||||||||||||| |||||||| || | Sbjct 305 GTATTCCAAGATATGTAGGGTAGCATCTTCCACCGCGGATGCTGGCNCGCACGTAATCGT 364 Query 6709 ACAGCTCGTG-CGAGGG 6724 | || ||||| |||||| Sbjct 365 ATAGTTCGTGCCGAGGG 381 >seq169466 Length=306 Score = 232 bits (256), Expect = 2e-56 Identities = 227/289 (79%), Gaps = 3/289 (1%) Strand=Plus/Minus Query 14486 GGCAG-AACGGGGTCCTGGAGAGCGATA-TCGGCGTGAAGTTCGACACTAGGAACTTCAG 14543 ||||| |||||||| ||||| ||||| |||| || ||||| ||||| | |||||||| Sbjct 300 GGCAGGAACGGGGTTCTGGAAAGCGACNGTCGGGGTAAAGTTTGACACCCGCAACTTCAG 241 Query 14544 GCTGGGCTGGGACCCCGTGACCGAGCTGGTCATGCCCGGG-GTGTACACCAACGAGGCCT 14602 ||||| | ||||| || || | || ||||||||| | || || || ||||| |||| Sbjct 240 ACTGGGGTTTGACCCAGTCACTGGTCTTGTCATGCCCTAGAGTATATACAAACGAAGCCT 181 Query 14603 TCCACCCCGATATTGTCTTGCTGCCCGGCTGCGGGGTGGACTTCACCGAGAGCCGCCTCA 14662 |||| || || || | |||||||| | |||||||||||||||| | |||||||| | Sbjct 180 TCCATCCAGACATCATTTTGCTGCCGGATCCCGGGGTGGACTTCACCCACAGCCGCCTGA 121 Query 14663 GCAACCTGCTGGGCATTCGCAAGAGGCAGCCCTTCCAGGAGGGCTTCCAGATCATGTACG 14722 ||||| || ||||||| |||||| |||| ||||||||||||||||| ||||| |||| Sbjct 120 GCAACTTGTTGGGCATCCGCAAGCGGCAACCCTTCCAGGAGGGCTTTAGGATCACCTACG 61 Query 14723 AGGATCTGGAGGGGGGCAACATCCCCGCGCTCCTGGATGTCGACGCCTA 14771 | || |||||||| || ||||| ||||| || ||||||| |||||||| Sbjct 60 ATGACCTGGAGGGTGGTAACATTCCCGCACTGTTGGATGTGGACGCCTA 12 >seq170248 Length=157 Score = 125 bits (138), Expect = 2e-24 Identities = 124/159 (78%), Gaps = 6/159 (4%) Strand=Plus/Minus Query 11130 GAGGAGCCCGAGGAGATGCGCGCGGCCCG---GTTCCACGCGGGGCGGGAGCTGCGGCGC 11186 |||||||||||||||||||| || || ||||||||| ||||| |||||||||| Sbjct 156 GAGGAGCCCGAGGAGATGCG---GGATCGAAAGTTCCACGCAGGGCGCGAGCTGCGGCAT 100 Query 11187 GGCCTGGACCGAAAGAGGGTGCTGAGGGACGAGGATTTCGAGGCGGACGAGCTGACGGGG 11246 |||||| | || || || ||||| | || ||||| || ||| | |||| || || ||| Sbjct 99 GGCCTGAATCGCGAGCGGTTGCTGCGCGAGGAGGACTTTGAGCCCGACGCGCGAACCGGG 40 Query 11247 ATCAGCCCCGCGCGCGCGCACGTGGCCGCGGCCAACCTG 11285 || || ||||||||||| |||||||| || ||| ||||| Sbjct 39 ATTAGTCCCGCGCGCGCACACGTGGCGGCCGCCGACCTG 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 116929396074400