Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Serinus_20canaria_20[refseq_20GCF_5F000534875.1_202014-01-15] 304,400 sequences; 1,152,100,110 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq77 136 7e-27 seq142687 122 2e-22 seq252792 84.2 4e-11 seq11 84.2 4e-11 >seq77 Length=1106213 Score = 136 bits (150), Expect = 7e-27 Identities = 128/163 (79%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 213528 GTGTACTCCATGATCTCGGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGG 213587 |||||||||| ||||| |||||||||||||||||| |||||||||||||||||| ||| Sbjct 1101077 GTGTACTCCACAATCTCAGTGCACAGGTTGCTGCATTTGATGGTGCCCAGGTTCTGCTGG 1101018 Query 213588 TTTGACTTTGCGTTGGCAGAATCCTTGTAGAGCATGTAGGGGGACCCGGTCTCTAGCTGG 213647 || ||| |||| ||| |||||||||||||||||||||| || ||||| |||| Sbjct 1101017 TTGCTCTTCCTGTTGCAAGAGTCCTTGTAGAGCATGTAGGGGGTGCCAGTCTCGGTCTGG 1100958 Query 213648 GACACCAGTATCTGGCTCCAGAGGTACCTGGCCTTGACCACCC 213690 ||| | | || | |||||| | | |||||| ||||||| Sbjct 1100957 GACTCGATGATGGCGTACCAGAGCTGCTGGGCCTTCACCACCC 1100915 Score = 125 bits (138), Expect = 1e-23 Identities = 155/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 213141 CCTTTGCTCACGGGGCTGCCCTGGTAAGAGGAGTAGGGGCCATGCTCCTTGGCCAGCTCG 213200 || ||||| || || ||||||||| | | ||||||||| ||||||||||||||||| Sbjct 1102968 CCCTTGCTGACCGGCGAGCCCTGGTAGGTGTCGTAGGGGCCCTGCTCCTTGGCCAGCTCA 1102909 Query 213201 CAGGACGCCTGCAGGGCAGCGTAGTAGATGGTTTCAAATATCTCCCTGTTGAGCTTCTTG 213260 ||| |||| |||||| ||||||||||||| || || || | | |||||| || Sbjct 1102908 CAGCTGGCCTCCAGGGCCCCGTAGTAGATGGTCTCGAAGATGTGCTGGTTGAGGCGCTGC 1102849 Query 213261 GCCTCTGGGGACGTGAAGGGCATCATCATGCGTTGGAACACATCAGCCAGCCCCTGGACC 213320 ||||| | | | |||||| | | |||| | ||| | |||||||| ||||| || Sbjct 1102848 GCCTCGGCGCTCTCGAAGGGGAACCTCATCAGGATGAAGGCGTCAGCCAGGCCCTGCACG 1102789 Query 213321 CCGATGCCGATGGGTCTGTGTCTCAGGTTAGA 213352 |||||||| ||||| | ||| | | |||| || Sbjct 1102788 CCGATGCCAATGGGCCGGTGCCGCCGGTTGGA 1102757 Score = 95.1 bits (104), Expect = 2e-14 Identities = 100/132 (76%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 212918 CTGGAAGTCACCTGAGAGCACCCTCCTCTGGTAAAAGTTTGAAGTGTAGGGCTCGATGCT 212977 |||||| || || ||||| ||||| | ||| | ||| ||||||||||||||| Sbjct 1104948 CTGGAACTCCCCCGAGAGGACCCTGCGTGTGTAGATGTTGCTGGTGTAGGGCTCGATGGA 1104889 Query 212978 CTCGTTGTTCCCCAGAATCTGTGCAGTGCTGGCTGTGGGCATGGGAGCCACCAGGAGACT 213037 ||| ||||| ||||| ||||| |||||| ||| ||||||||||| | | ||||| || Sbjct 1104888 CTCATTGTTGCCCAGGATCTGGGCAGTGGAGGCCGTGGGCATGGGGGAAATGAGGAGGCT 1104829 Query 213038 GTTCCTCACTCC 213049 |||||| || || Sbjct 1104828 GTTCCTGACACC 1104817 Score = 93.3 bits (102), Expect = 8e-14 Identities = 111/151 (74%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 213813 ACTCTCTGCATGAACAGGTCCGGGACCCACAGCGCGGTGAACAGGTCCCTGGTCCTCCTC 213872 |||| || |||||| || || || | ||| || || |||||||||||||| | | | Sbjct 1099962 ACTCGCTTCATGAAAAGATCAGGAATCCAGAGAGCAAAGAACAGGTCCCTGGCTCGCTGC 1099903 Query 213873 TCGTCCACTCCAGAGTTTTTGCGCAGATCTAGAAAGTCAAAGATGTCCGCGTGCCACGGC 213932 || || || | ||| || || || || || |||||||||||| |||||||||| Sbjct 1099902 TCTTCTTTACCTGTGTTCTTCTTCAAGTCCAGGAACTCAAAGATGTCCAAGTGCCACGGC 1099843 Query 213933 TCCATGTAGATGGCAAAGGCGCCCGGCCTCT 213963 |||| |||||||||||| || || || |||| Sbjct 1099842 TCCAGGTAGATGGCAAAAGCCCCAGGTCTCT 1099812 >seq142687 Length=779 Score = 122 bits (134), Expect = 2e-22 Identities = 150/205 (73%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 241415 AGGACCTCCTGTTTGAGTTGGGCCACCTGGTCCCGCAGAACGGACGCGGTATTGGACAGT 241474 || |||| ||| ||||| ||||| ||||| || || || | | ||||| || || Sbjct 205 AGCACCTTCTGCTTGAGCTGGGCGACCTGCTCGCGGAGCAGGCTGGCGGTGGAGGCGAGC 146 Query 241475 CCTGCGTTGTCAGACTTGAGCACCTTCACTTTCTCCTCCAGCCGCGCGATGCGTTCCAGT 241534 | | ||| | |||||| |||||| |||||||||||||| | ||| || ||||| Sbjct 145 TCCGTGTTCTGGCTCTTGAGGCTCTTCACCTTCTCCTCCAGCCGGGAGATCCGCTCCAGC 86 Query 241535 TTGCGCCGGCGGCATTTGGTGGCTGCCAAGCGGTTCCGGAGTCTCTTACGTTCCGCCTTG 241594 || | | |||||| |||| ||| || | |||||||| || | ||| |||||||||||| Sbjct 85 TTCCTCTTGCGGCACTTGGAGGCGGCGATGCGGTTCCTCAGCCGCTTCCGTTCCGCCTTG 26 Query 241595 ATGCGTTCCTGGTCCTCCATGTCGA 241619 ||||| ||||| |||||||||| Sbjct 25 ATGCGCTCCTGCGTGTCCATGTCGA 1 >seq252792 Length=893 Score = 84.2 bits (92), Expect = 4e-11 Identities = 98/130 (75%), Gaps = 2/130 (2%) Strand=Plus/Plus Query 212696 GTTCAGGGACTGACTCTGGTCTATGAATGGGGCCCTGTCAGCGGCCATGTCTATGATATC 212755 |||||||||||| |||||||| ||||| | | ||||| || ||||| | | ||| Sbjct 513 GTTCAGGGACTGGCTCTGGTCGATGAAGGCCCCTCTGTCTGCAGCCATCTTCAGGATGGT 572 Query 212756 TCTCTGGGAGAGCTCCCACACGGTCTTGAAGATTTCTTTGAGGTCCTCTGGGAAGC-CGG 212814 | | ||||||| ||||||||| || ||| ||| | || ||||| || ||||| | | | Sbjct 573 TTTTTGGGAGATCTCCCACACAGTTTTGTAGAGCTGCTTCAGGTCATC-GGGAATCTCAG 631 Query 212815 GGATGTTCTG 212824 |||||||||| Sbjct 632 GGATGTTCTG 641 >seq11 Length=25151939 Score = 84.2 bits (92), Expect = 4e-11 Identities = 69/84 (82%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 38965 GCTCCCACCTGTTGGCGGAGAAGAGCAGGTGGACTGCGTGGTCGTCCAGCTCCGTCTTAC 39024 ||||||| | |||||| |||||||||||||||| | |||||| ||||| | | ||| | Sbjct 21091030 GCTCCCAGCGGTTGGCAGAGAAGAGCAGGTGGATGGTGTGGTCCTCCAGGTTCTTCTCCC 21090971 Query 39025 TCTCCAGGTACGAGCTGATCATCT 39048 || ||||||| |||||||||| || Sbjct 21090970 TCCCCAGGTAGGAGCTGATCAGCT 21090947 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 927988317696000