Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Serinus_20canaria_20[refseq_20GCF_5F000534875.1_202014-01-15] 304,400 sequences; 1,152,100,110 total letters Query= NC_020474.2 Length=180421 Score E Sequences producing significant alignments: (Bits) Value seq26 215 6e-51 seq13 129 7e-25 >seq26 Length=11423905 Score = 215 bits (238), Expect = 6e-51 Identities = 654/1003 (65%), Gaps = 8/1003 (1%) Strand=Plus/Plus Query 160033 AGAT-CAGCGATCTGTGTCGCAGATGTTCGTCCAGACATTGGACGGCGAACACGTCAACG 160091 |||| ||| | | ||||||||| || || |||| |||| || || || ||| || Sbjct 382785 AGATACAGAGCTTTGTGTCGCAAATACTCTTCCAAGCATTTCACTGCAAAAGGGTCGACA 382844 Query 160092 TCTTCGTCGAATTTATTTGCGAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCT 160151 || ||| || ||||| || || | ||||| ||| |||| ||||||| || ||| Sbjct 382845 TCAGTGTCAAACTTATTAGCAAATAAGTGGTG---GTTTCGTAGTATCCAGTTCAAGTCC 382901 Query 160152 CCGGACCCGAACACGCAGACGGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCT 160211 || || || || || || || || ||||| || || |||| || ||||| | || Sbjct 382902 CCTACTCCAAAAACACAAACAGAGCGAATGTGAACTCCACTGCACGGTGGGTAGGGTGCA 382961 Query 160212 CCTTTCGCCACGTCACCTTCGTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATG 160271 ||||| | ||| |||||||| |||||||||| || ||||||||||| | || | |||| Sbjct 382962 CCTTTGGACACATCACCTTCAAAGTACTGCCATTTGACAAACCTGGCCAGGGCATTCATG 383021 Query 160272 TCGGAGGTGTCGTATTTGT-ACATCAGGGGAACGGCACCGGGAACGCCGGGCATACGCTG 160330 || || ||| || |||| || | | ||| || || || || | || || | ||| Sbjct 383022 TCAGAAACGTCATACTTGTCACTGGAAGAAAAC-GCGCCTGGGACTTCAGGGATTCTCTG 383080 Query 160331 TAGGGTGGCCCACAGGTGTTCGTCGGGGCTGTACGTGTCCTTAGACCATTCCATGAACTC 160390 | || |||||||||| || || |||||||| || || || | ||| || ||||||| Sbjct 383081 AATCGTTGCCCACAGGTACTCATCTGGGCTGTAAGTATCTTTCGCCCACTCAATGAACTT 383140 Query 160391 TCCGATTAACCTGTCCCGCAGAACGTGAGTAACGTAGGATCTGGTCACGACAAAGTACGC 160450 ||| |||| || || | || || ||| | || ||||| || || Sbjct 383141 AAGTATTTTGCTGTTTTCTAGTACATATTCTACAAAGCTCCTGCTAACTACAAAATAGGC 383200 Query 160451 GCTGCCGGAGAATATCGGTATGGGTATAGGCGGCGTGTCTTTGTCCTGACCGGTGTTAGA 160510 ||||| || || | ||| | | ||| || | |||||| || ||||| Sbjct 383201 ACTGCCAGAAAAAACCGGAGTACTGAGAGGTGGTAGTTGTTTGTCTATGCCTGTGTTCTT 383260 Query 160511 CACCACTCCTTTCACCAGCGCGTGTCGCTTCTTCCACCTGACCATCTTGTGCGGTGGCAT 160570 | || | | | | | || | ||||||||||| || || | ||||| Sbjct 383261 TATTTTACCGTCAATAATCTCATGGTGTTTCTTCCACCTTACTTCTTTATAAACAGGCAT 383320 Query 160571 GCGTTCCGTCTCTAGACTGTTGGCACCGTCGAGCGATTTCAGCTGCTTGACGATCTCTAG 160630 ||| || || | ||||| |||| | || | ||| | | || || || || Sbjct 383321 TTTTTCTGTTTCCAAGCTGTTTTCACCCTTAAGGGCTTTTAATTTCTCTACTATTTCCTT 383380 Query 160631 GTTCGTCTTGAGCGGAAAGTCGGTACCGCACAAGTTTATCACGTACTTCCATTTCGCGCT 160690 ||| ||||| | |||||||| |||| || | |||||| | ||| ||||| || | || Sbjct 383381 GTTGGTCTTTATAGGAAAGTCCATACCACATAGGTTTATTAGGTATTTCCAGTTTGAACT 383440 Query 160691 CAGGTCGTGCAGGTCCCTCATGCAATTAATATCTGCCTGCACGCGGCTCCAGGAAGCGTA 160750 ||| || || ||||||| ||||| ||||||||||| | |||||| ||||| || Sbjct 383441 TCTTCTGTGGAGATCTTTCATGCAGTTAATGTCTGCCTGCACTCTGCTCCATGAAGCATA 383500 Query 160751 CACTACGTTCTCTAGTTTACTGGCCACAAAGACGTTATCGAAACACGACACGATTCCCAC 160810 || || |||||| | |||| | |||||| ||||| ||||| || || |||||| Sbjct 383501 TACCACACTCTCTAACTGGCTGGAAATAAAGACATTATCAAAACATGAGACTATTCCCTT 383560 Query 160811 CACCGCCAGAAAGAACATCTTAT-CCGCCTTTCGGTCCACGTGCACGCAATACAGGTTCT 160869 ||| | ||| || || || | | |||| ||| || || | ||| || | |||| Sbjct 383561 CACAG-CAGCAAAAAAGGATTCTGGAGACTTTTTGTCTACATGAATGCAGTAAAAATTCT 383619 Query 160870 GAGGCGCGTAGATGGCCCTGAGCAACCTCTCGAACATCTCTATCTTATGATGGATCACGA 160929 | || || ||||| | || || | || || | |||||| || || |||| | ||| | Sbjct 383620 GTGGAGCATAGATTGATCTTAGAAGTCTATCAAGCATCTCAATTTTGTGATAAACCACTA 383679 Query 160930 TAGAGTAGGCTATCGGAAACTCGGTCTCCTCGCGACTCAGGGACCCGGTCAGGTACTTTC 160989 | ||||| || || ||||| || | || || ||| || | | | | ||| || | Sbjct 383680 TTGAGTAAGCAATTGGAAATTCTGCTTCTTCATCACTGAGAGGTTCCATAATGTATTTCC 383739 Query 160990 GCGTCTTGATAAAATAATCACAATCCCGCGTCATGTTGATATA 161032 |||||| | || | |||| || |||||||| ||||| Sbjct 383740 TAGTCTTGGTGAAGGAGGCACAGTCTGCAGTCATGTTAATATA 383782 >seq13 Length=17727969 Score = 129 bits (142), Expect = 7e-25 Identities = 236/345 (68%), Gaps = 3/345 (1%) Strand=Plus/Plus Query 160045 TGTGTCGCAGATGTTCGTCCAGACATTGGACGGCGAACACGTCAACGTCTTCGTCGAATT 160104 |||| ||||| | || |||||||| |||||||| |||| || || |||||| | Sbjct 2539511 TGTGGCGCAGGTACTCCTCCAGACACTGGACGGCCGCATCGTCCACCTCGGGGTCGAACT 2539570 Query 160105 TATTTGCGAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGACCCGAACA 160164 | || || | |||||||| | ||| || |||||| ||||||| || |||| | | Sbjct 2539571 TGTTGGCCAGGAGATGGTGT---TGCTGCAGCATCCAGGGCACGTCGCCCACCCCGTAGA 2539627 Query 160165 CGCAGACGGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTTCGCCACGT 160224 ||||| ||| || ||| |||| |||| |||||||| | || || || || || Sbjct 2539628 TGCAGATGGAGCGCTGGTGGCGGCCGGTGCAGGGCGGGTAGGGCGCGCCCTTGCTCATGT 2539687 Query 160225 CACCTTCGTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGAGGTGTCGT 160284 | || || ||||| |||||| || | | || | || |||||| ||| | | Sbjct 2539688 CCCCCTCCAGGTACTCCCACTTGACCAGGCGGGGAAGGGCGGTCATGTCCGAGAGCTGGA 2539747 Query 160285 ATTTGTACATCAGGGGAACGGCACCGGGAACGCCGGGCATACGCTGTAGGGTGGCCCACA 160344 | || | | |||||| | | || || ||||| ||||| || | ||||||||||| | Sbjct 2539748 ACTTATCGCTGAGGGGAGTGCCCCCCGGCACGCCCGGCATGCGGTTCAGGGTGGCCCAGA 2539807 Query 160345 GGTGTTCGTCGGGGCTGTACGTGTCCTTAGACCATTCCATGAACT 160389 || ||||| || ||||| ||||||| ||||| || | ||||| Sbjct 2539808 CGTACTCGTCAGGACTGTAGCTGTCCTTGGACCACTCGAGGAACT 2539852 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 575022880944000