Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Serinus_20canaria_20[refseq_20GCF_5F000534875.1_202014-01-15] 304,400 sequences; 1,152,100,110 total letters Query= NC_020485.1 Length=34302 Score E Sequences producing significant alignments: (Bits) Value seq171425 127 4e-25 seq169466 80.6 6e-11 >seq171425 Length=537 Score = 127 bits (140), Expect = 4e-25 Identities = 287/412 (70%), Gaps = 20/412 (5%) Strand=Plus/Plus Query 6269 TACTTCACCGCGTAAGGGCTCGTTAGTCCAACACAGTCGTCCACCTTTGCGGGATCCAAA 6328 |||| | ||||||| | ||||||| ||||| || || || || || ||||| || | || Sbjct 3 TACTACTCCGCGTAGGCGCTCGTTGGTCCAGCAGAGGCGGCCGCCCTTGCGCGAGCAGAA 62 Query 6329 AGGAGGAAGAACATCTAAGTTGCGT-TCATCTGGAGGGTCGGCGTCAATTGTAAAAATAG 6387 || || || |||| | ||||| || || || ||||| ||||| | ||||| | Sbjct 63 TGGCGGTAGGGG-TCTA-GCTGCGTCTCGTCCGGGGGGTCTGCGTCCACGGTAAAGACCC 120 Query 6388 CAGGCAAAAGTTGTTTGTTAAAATAATCAATTATCTGTAA--CTTATTACTA-AGGGCCA 6444 | |||| || | || || || || ||||| | ||| | | || ||| Sbjct 121 CGGGCAGCAGGCGCGCGTCGAAGTAGTC---TATCTTGCATCCTTGCAAGTCTAGCGCCT 177 Query 6445 ATTCCCAGTCGCGTACGGCCAAAGCTCGTTCATATGGACTTAA-GGGGGCACCCCATGGC 6503 | ||| |||| |||| | || || || ||||| | | ||||| |||||||||| Sbjct 178 GCTGCCATGCGCGGGCGGCAAGCGCGCGCTCGTATGGGTTGAGTGGGGGGACCCCATGGC 237 Query 6504 ATAGGA-TGGGTTAAAGCTGAAGCGTACATGCCGC-AAATGTCATAAACATA-AATGGGC 6560 || || ||||| | || || ||||||||||||| ||||||| ||||| || | |||| Sbjct 238 ATGGGGGTGGGTGAGCGCGGAGGCGTACATGCCGCAAAATGTCGTAAACGTAGAGGGGGC 297 Query 6561 TC-CTGAAGTACTCCAATGTAAGTTGGGTAACAGCGCCCTCCTCTGATGCTGGCGCGCAC 6619 || ||| |||| ||||| || || ||||| || | || || | ||||||||| ||||| Sbjct 298 TCTCTG-AGTATTCCAAGATATGTAGGGTAGCATCTTCCACCGCGGATGCTGGCNCGCAC 356 Query 6620 GTAGTCATAAAGCTCGTG-TGA-GGGAGCC-AGTAGGT--GGCGACTGAGGT 6666 ||| || || || ||||| || ||||||| || |||| || ||| ||||| Sbjct 357 GTAATCGTATAGTTCGTGCCGAGGGGAGCCGAGGAGGTTCGGGGACCGAGGT 408 >seq169466 Length=306 Score = 80.6 bits (88), Expect = 6e-11 Identities = 168/249 (67%), Gaps = 1/249 (0%) Strand=Plus/Minus Query 14046 GGTGTAAAATTTGACACCCGAAATTTTCGTTTGGGATGGGATCCGCAAACCGAACTAGTA 14105 || ||||| ||||||||||| || || | |||| | || || || | || || Sbjct 269 GGGGTAAAGTTTGACACCCGCAACTTCAGACTGGGGTTTGACCCAGTCACTGGTCTTGTC 210 Query 14106 ATG-CCAGGAGTTTATACCAACGAAGCTTTTCACCCAGATGTGGTGTTGCTTCCTGGCTG 14164 ||| || |||| ||||| |||||||| || || ||||| | | ||||| || | Sbjct 209 ATGCCCTAGAGTATATACAAACGAAGCCTTCCATCCAGACATCATTTTGCTGCCGGATCC 150 Query 14165 CGGCGTTGATTTCACATATAGCCGTCTTAGCAACTTGCTAGGGATCAGAAAAAGAATGCC 14224 ||| || || ||||| | ||||| || ||||||||| | || ||| | || | || Sbjct 149 CGGGGTGGACTTCACCCACAGCCGCCTGAGCAACTTGTTGGGCATCCGCAAGCGGCAACC 90 Query 14225 ATTTCAGGAAGGATTTCAAATTATGTACGAAGATTTGGTAGGAGGCAACATTCCAGCCCT 14284 || ||||| || ||| || | ||||| || ||| || || |||||||| || || Sbjct 89 CTTCCAGGAGGGCTTTAGGATCACCTACGATGACCTGGAGGGTGGTAACATTCCCGCACT 30 Query 14285 GCTAGACGT 14293 | | || || Sbjct 29 GTTGGATGT 21 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 109248461459200