Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Serinus_20canaria_20[refseq_20GCF_5F000534875.1_202014-01-15] 304,400 sequences; 1,152,100,110 total letters Query= NC_020487.1 Length=36838 Score E Sequences producing significant alignments: (Bits) Value seq171425 237 4e-58 seq169466 214 4e-51 seq170248 102 2e-17 >seq171425 Length=537 Score = 237 bits (262), Expect = 4e-58 Identities = 302/403 (75%), Gaps = 16/403 (4%) Strand=Plus/Plus Query 7004 CCGCGCAGGCTCTCGTTGGTCCAGCAGAGACGGCCGCCCTTGCGCGAGCAGAAGGGGGGC 7063 ||||| |||| |||||||||||||||||| ||||||||||||||||||||||| || || Sbjct 10 CCGCGTAGGCGCTCGTTGGTCCAGCAGAGGCGGCCGCCCTTGCGCGAGCAGAATGGCGGT 69 Query 7064 AGGACGTCGAGCATGTCCTCGGGCGGGGGGTCGGCGTCGATGGTGAAGATGCCGGGCAGC 7123 ||| ||| ||| |||| ||||||||| ||||| | ||| |||| ||||||||| Sbjct 70 AGG-GGTCTAGCTGCGTCTCGTCCGGGGGGTCTGCGTCCACGGTAAAGACCCCGGGCAGC 128 Query 7124 AGGTCGGGGTCAAAGTAGTCCAGGGGCGTG--TCGCGGC-GGTCGAGCCGTTGCTGCCAG 7180 ||| | ||| |||||||| | | || || || ||| ||| |||||||| Sbjct 129 AGGCGCGCGTCGAAGTAGTCTA---TCTTGCATCCTTGCAAGTCTAGCGCCTGCTGCCAT 185 Query 7181 GCGTGCAGGGCCAGGGCCCGCTCGTAGGGGTTGA--GGGGCGCCCCCGCGGGGAAGGGAT 7238 ||| | ||| || || |||||||| ||||||| |||| | |||| || ||| | Sbjct 186 GCGCGGGCGGCAAGCGCGCGCTCGTATGGGTTGAGTGGGGGGACCCCATGGCATGGGGGT 245 Query 7239 GGGTGAGGGCGGAGGCGTACATGCCGC-AGATGTCGTAGACGTAGA-GGGGCTCCTCGAG 7296 ||||||| ||||||||||||||||||| | |||||||| ||||||| ||||||| ||| Sbjct 246 GGGTGAGCGCGGAGGCGTACATGCCGCAAAATGTCGTAAACGTAGAGGGGGCTCTCTGAG 305 Query 7297 GACGCCGATGAAGGTGGGGTAGCAGCGCCCCCCGCGGATGCTGGCGCGGACGTAGTCATA 7356 | || | | || |||||||| | || |||||||||||||| || ||||| || || Sbjct 306 TATTCCAAGATATGTAGGGTAGCATCTTCCACCGCGGATGCTGGCNCGCACGTAATCGTA 365 Query 7357 CAACTCGTG-GGAGGG--GGCGAGGAGG-ACGGAG-CCGAGGT 7394 | ||||| ||||| | |||||||| ||| | ||||||| Sbjct 366 TAGTTCGTGCCGAGGGGAGCCGAGGAGGTTCGGGGACCGAGGT 408 >seq169466 Length=306 Score = 214 bits (236), Expect = 4e-51 Identities = 204/260 (78%), Gaps = 1/260 (0%) Strand=Plus/Minus Query 14941 TCGGGGTGAAGTTTGACACACGCAACTTCCGCCTGGGGTACGACCCGGTGACGAAGCTGG 15000 ||||||| ||||||||||| ||||||||| | ||||||| ||||| || || || | Sbjct 271 TCGGGGTAAAGTTTGACACCCGCAACTTCAGACTGGGGTTTGACCCAGTCACTGGTCTTG 212 Query 15001 TGACGCCGGGCAGC-TATACGTACGAGGCCTTTCATCCCGACATCATTTTGCTGCCCGGG 15059 | | ||| || ||||| |||| ||||| ||||| ||||||||||||||||| | Sbjct 211 TCATGCCCTAGAGTATATACAAACGAAGCCTTCCATCCAGACATCATTTTGCTGCCGGAT 152 Query 15060 TGCGCGGTGGACTTTACCTACAGCCGCCTGAGCAACCTGCTGGGCATCCGCAAGCGGCAG 15119 || ||||||||| ||| ||||||||||||||||| || ||||||||||||||||||| Sbjct 151 CCCGGGGTGGACTTCACCCACAGCCGCCTGAGCAACTTGTTGGGCATCCGCAAGCGGCAA 92 Query 15120 CCCTTCCAGGAGGGTTTCATCATCGAGTACGATGACCTGGTGGGGGGCAACATCCCGGCT 15179 |||||||||||||| || | ||| ||||||||||||| ||| || ||||| || || Sbjct 91 CCCTTCCAGGAGGGCTTTAGGATCACCTACGATGACCTGGAGGGTGGTAACATTCCCGCA 32 Query 15180 CTCCTCGACGTGGCGGCCTA 15199 || | || |||| ||||| Sbjct 31 CTGTTGGATGTGGACGCCTA 12 >seq170248 Length=157 Score = 102 bits (112), Expect = 2e-17 Identities = 116/155 (75%), Gaps = 3/155 (2%) Strand=Plus/Minus Query 11442 AGGAACCCGAGGAGATGAGGGATTTGAGGTTTCGGGCCGGTCGGGAGTTGC---ATGATC 11498 |||| |||||||||||| ||||| | ||| | || || || ||| ||| ||| | Sbjct 155 AGGAGCCCGAGGAGATGCGGGATCGAAAGTTCCACGCAGGGCGCGAGCTGCGGCATGGCC 96 Query 11499 TGGATCGCGAGCGGGTGCTGCGATCGGAGGATTTCGAGGTGGACCCGCGGACGGGCGTGA 11558 || ||||||||||| ||||||| |||||| || ||| ||| |||| || || | | Sbjct 95 TGAATCGCGAGCGGTTGCTGCGCGAGGAGGACTTTGAGCCCGACGCGCGAACCGGGATTA 36 Query 11559 GTCCCGCGCGGGCGCACGTGGAGGCGGCCAACCTG 11593 |||||||||| || ||||||| ||| ||| ||||| Sbjct 35 GTCCCGCGCGCGCACACGTGGCGGCCGCCGACCTG 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 117334327040000