Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Serinus_20canaria_20[refseq_20GCF_5F000534875.1_202014-01-15] 304,400 sequences; 1,152,100,110 total letters Query= NC_021168.1 Length=34391 Score E Sequences producing significant alignments: (Bits) Value seq169466 168 1e-37 seq171425 125 2e-24 >seq169466 Length=306 Score = 168 bits (186), Expect = 1e-37 Identities = 215/294 (73%), Gaps = 2/294 (1%) Strand=Plus/Minus Query 13704 GAACGGCGTCCTTGAGAGCGATA-TAGGCGTGAAATTCGATACCCGAAACTTCCGACTGG 13762 |||||| || || || ||||| | || || || || || ||||| |||||| |||||| Sbjct 295 GAACGGGGTTCTGGAAAGCGACNGTCGGGGTAAAGTTTGACACCCGCAACTTCAGACTGG 236 Query 13763 GGTGGGATCCGGTGACCAGGCTGGTGATGCCCGGG-GTGTACACCAACGAAGCTTTTCAC 13821 ||| || || || || | || || |||||| | || || || |||||||| || || Sbjct 235 GGTTTGACCCAGTCACTGGTCTTGTCATGCCCTAGAGTATATACAAACGAAGCCTTCCAT 176 Query 13822 CCGGACATCGTGCTGCTGCCGGGCTGCGGGGTGGACTTTACGCAGAGCCGGCTGAGTAAC 13881 || |||||| | ||||||||| |||||||||||| || || ||||| ||||| ||| Sbjct 175 CCAGACATCATTTTGCTGCCGGATCCCGGGGTGGACTTCACCCACAGCCGCCTGAGCAAC 116 Query 13882 CTGCTAGGAATTAGAAAGCGCCGTCCCTTTCAAGAAGGCTTTCAAATCATGTATGAAGAT 13941 || | || || | ||||| | ||||| || || |||||| |||| || || || Sbjct 115 TTGTTGGGCATCCGCAAGCGGCAACCCTTCCAGGAGGGCTTTAGGATCACCTACGATGAC 56 Query 13942 TTGGAGGGAGGAAACATCCCCGCCCTGCTGGACGTGCCCGCCTACGAGGCCAGC 13995 ||||||| || ||||| ||||| ||| |||| ||| ||||||| |||| ||| Sbjct 55 CTGGAGGGTGGTAACATTCCCGCACTGTTGGATGTGGACGCCTACCAGGCAAGC 2 >seq171425 Length=537 Score = 125 bits (138), Expect = 2e-24 Identities = 140/182 (77%), Gaps = 4/182 (2%) Strand=Plus/Plus Query 6138 CGGCCAGAGCCCTCTCGTACGGATTAAG-GGGAGGACCCCAAGGCATGGGG-TGGGTAAG 6195 |||| || || | |||||| || || || ||| |||||||| ||||||||| ||||| || Sbjct 193 CGGCAAGCGCGCGCTCGTATGGGTTGAGTGGGGGGACCCCATGGCATGGGGGTGGGTGAG 252 Query 6196 GGCGGAAGCGTACATGCCACAAA-TGTCATAAACATAAAGAGG-CTGGCGTAAAACGCCA 6253 ||||| ||||||||||| |||| |||| ||||| || || || || | | | ||| Sbjct 253 CGCGGAGGCGTACATGCCGCAAAATGTCGTAAACGTAGAGGGGGCTCTCTGAGTATTCCA 312 Query 6254 ATGTATGTAGGATAGCAACGTCCGCCGCGAATGCTGGCCCTGACGTAATCGTACATTTCA 6313 | |||||||| ||||| | ||| ||||| |||||||| | ||||||||||| | ||| Sbjct 313 AGATATGTAGGGTAGCATCTTCCACCGCGGATGCTGGCNCGCACGTAATCGTATAGTTCG 372 Query 6314 TG 6315 || Sbjct 373 TG 374 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 109532231978400