Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Serinus_20canaria_20[refseq_20GCF_5F000534875.1_202014-01-15] 304,400 sequences; 1,152,100,110 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq19 93.3 8e-14 seq2 89.7 1e-12 >seq19 Length=13664266 Score = 93.3 bits (102), Expect = 8e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 192308 TACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAG 192367 ||||||| | || || | || | || | ||| | ||| || |||||| || |||| Sbjct 12085096 TACCACCCCGCAGGCGCAGGACAAGGTGCAGAGTTGACTCCTTCTGGATATTGTAGTCAG 12085155 Query 192368 ATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTG 192427 | | || || |||| |||| || || ||||||||||| | ||||| || ||||| | Sbjct 12085156 AGAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGAG 12085215 Query 192428 GTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTA 192487 | || ||||| || ||||| || || ||| ||||| || | || | ||| | Sbjct 12085216 GGATGCCTTCCTTGTCTTGGATCTTGGCTTTGACATTCTCAATGGTGTCACTGGGTTCGA 12085275 Query 192488 CTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 |||| ||||| ||||| || ||||| | || || | ||| |||||||| Sbjct 12085276 CTTCCAGAGTGATGGTCTTGCCAGTCAGGGTCTTGACAAAGATCTGCAT 12085324 >seq2 Length=67421796 Score = 89.7 bits (98), Expect = 1e-12 Identities = 81/102 (79%), Gaps = 0/102 (0%) Strand=Plus/Minus Query 49865 TTCATTACTAAAAGTTAATCCTGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGC 49924 ||||||| |||||| | ||| |||||||||||||| || || |||||||| |||||||| Sbjct 53986077 TTCATTAGAAAAAGTCAGTCCAGGCATTAATCCTCTTTTCTTCAGCCAAAAAATTGATGC 53986018 Query 49925 AAAACTACTAGAAAAGAATATACCCTCGACACACGCAAATGC 49966 |||| | ||||||||| || || || ||| ||||| || Sbjct 53986017 AAAAGAGCCAGAAAAGAAGATTCCTTCCACAGCTGCAAAGGC 53985976 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 980640404940000