Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Serinus_20canaria_20[refseq_20GCF_5F000534875.1_202014-01-15] 304,400 sequences; 1,152,100,110 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq204287 138 1e-27 seq23300 129 5e-25 seq29 123 2e-23 seq19 114 1e-20 >seq204287 Length=600 Score = 138 bits (152), Expect = 1e-27 Identities = 160/216 (74%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 ||||||||||||| | || || || || || || ||||| || || ||||| || ||| Sbjct 292 GATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACTATCACCCTGGAAGTCGAGCCCAG 233 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | || | || || |||||||| ||||| ||||| || |||||||| || Sbjct 232 TGACACCATCGAGAATGTGAAGGCCAAGATCCAGGACAAGGAAGGTATCCCTCCCGACCA 173 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || | ||||||| || || || |||||||||||| | | | |||||||||| || Sbjct 172 GCAGAGGCTGATCTTCGCTGGCAAGCAGCTGGAGGATGGTCGTACCCTGTCAGATTACAA 113 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCG 24918 ||| || |||||||| || || ||| ||||| |||| Sbjct 112 CATCCAGAAGGAATCCACCCTGCACCTGGTGCTGCG 77 Score = 102 bits (112), Expect = 7e-17 Identities = 152/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 |||||||||||| | ||||| || || || || || || || || || || || ||| Sbjct 520 GATGCAGATCTTCGTAAAAACCCTGACTGGCAAGACCATCACTCTGGAGGTTGAGCCCAG 461 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | || | || || |||||||| ||||| ||||| || |||||||| || Sbjct 460 TGACACCATCGAGAATGTGAAGGCCAAGATCCAGGACAAGGAAGGTATCCCTCCCGACCA 401 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || | ||||||| || || || |||||||| ||| | | | | |||| || || || Sbjct 400 GCAGAGGCTGATCTTCGCTGGCAAGCAGCTGGAAGATGGGCGCACCCTGTCTGACTACAA 341 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCG 24918 ||| || || || || || || ||| | || |||| Sbjct 340 CATCCAGAAAGAGTCAACTCTGCACCTTGTCCTGCG 305 >seq23300 Length=271 Score = 129 bits (142), Expect = 5e-25 Identities = 158/216 (73%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 ||||||||||||| | || || || || || || || || || || ||||| || ||| Sbjct 6 GATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTGGAAGTCGAGCCCAG 65 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | || | || || |||||||| ||||| || || || || ||||| || Sbjct 66 TGACACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCCGACCA 125 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || | |||||||||| ||||| |||||||| ||| | | | |||||||||| || Sbjct 126 GCAGAGGCTGATCTTTGCAGGGAAGCAGCTGGAAGATGGTCGTACCCTGTCAGATTACAA 185 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCG 24918 ||| || |||||||| || || ||| ||||| |||| Sbjct 186 CATCCAGAAGGAATCCACCCTGCACCTGGTGCTGCG 221 >seq29 Length=9066916 Score = 123 bits (136), Expect = 2e-23 Identities = 157/216 (73%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 ||||||||||||| | || || || || || || || || || || || || || ||| Sbjct 5719853 GATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTGGAGGTTGAGCCCAG 5719912 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | || | || || |||||||| ||||| || || || || || || || Sbjct 5719913 TGACACCATCGAGAATGTGAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCAGACCA 5719972 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || | |||||||||| || || |||||||||||| | | | | |||||||||| || Sbjct 5719973 GCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAGGATGGGCGCACCCTGTCAGATTACAA 5720032 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCG 24918 ||| || |||||||| || || ||| ||||| |||| Sbjct 5720033 CATCCAGAAGGAATCCACCCTGCACCTGGTGCTGCG 5720068 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || || || || || ||||| || || || || || ||| Sbjct 5719626 ATGCAGATCTTTGTGAAGACCCTGACTGGAAAGACTATCACCCTTGAGGTGGAGCCCAGT 5719685 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||| ||||| || || || ||||| ||||| Sbjct 5719686 GACACCATCGAGAATGTGAAGGCCAAGATCCAGGACAAGGAGGGCATTCCTCCAGATCAG 5719745 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | |||||||| || || || |||||||| ||| | | | || || || ||| Sbjct 5719746 CAGAGGTTGATCTTCGCTGGCAAGCAGCTGGAAGATGGTCGTACTCTCTCTGACTACAAC 5719805 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCG 24918 || || || || || || || ||| | || |||| Sbjct 5719806 ATCCAGAAAGAGTCAACTCTGCACCTTGTCCTGCG 5719840 >seq19 Length=13664266 Score = 114 bits (126), Expect = 1e-20 Identities = 170/240 (71%), Gaps = 2/240 (1%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || || || || || || || || || ||||| ||| ||| Sbjct 12085324 ATGCAGATCTTTGTCAAGACCCTGACTGGCAAGACCATCACTCTGGAAGTCGAACCCAGT 12085265 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || ||| |||||||||||||| ||||| || ||||| || || Sbjct 12085264 GACACCATTGAGAATGTCAAAGCCAAGATCCAAGACAAGGAAGGCATCCCTCCTGACCAG 12085205 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | |||||||||| || || |||||||| ||| | | | | || || || || Sbjct 12085204 CAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCTGACTACAAT 12085145 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGCGGAACTGAGCCA 24943 || || ||||| || || || ||| | || |||| |||| || | | |||||| ||| Sbjct 12085144 ATCCAGAAGGAGTCAACTCTGCACCTTGTCCTGCGCCTGCGGGGTG--GTAACTGAACCA 12085087 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || | || || || || || || || || || || ||| Sbjct 12085552 ATGCAGATCTTCGTCAAGACCTTGACTGGCAAGACCATCACCCTTGAGGTCGAGCCCAGT 12085493 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | |||| || || |||||||||||||| ||||| || ||||| || || Sbjct 12085492 GACACCATTGAAAATGTCAAGGCCAAGATCCAAGACAAGGAAGGCATCCCTCCTGACCAG 12085433 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | |||||||||| || || |||||||||||| | | | | || || || ||| Sbjct 12085432 CAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAGGATGGCCGTACCCTCTCTGACTACAAC 12085373 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 || || |||||||| ||||| || | ||| |||| |||| || || Sbjct 12085372 ATCCAGAAGGAATCCACACTGCATCTCGTGCTGCGCCTGCGGGGTGG 12085326 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448185739632000