Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Serinus_20canaria_20[refseq_20GCF_5F000534875.1_202014-01-15] 304,400 sequences; 1,152,100,110 total letters Query= NC_022266.1 Length=31967 Score E Sequences producing significant alignments: (Bits) Value seq171425 257 3e-64 seq169466 228 2e-55 seq170248 113 9e-21 seq169021 84.2 4e-12 >seq171425 Length=537 Score = 257 bits (284), Expect = 3e-64 Identities = 293/385 (76%), Gaps = 8/385 (2%) Strand=Plus/Plus Query 6502 CCGCGCAGTGGCTCGTTGGTCCAGCAGAGGCGCCCGCCCTTGCGCGAGCAGAAGGGGGGC 6561 ||||| || |||||||||||||||||||||| |||||||||||||||||||| || || Sbjct 10 CCGCGTAGGCGCTCGTTGGTCCAGCAGAGGCGGCCGCCCTTGCGCGAGCAGAATGGCGGT 69 Query 6562 AGGACGTCGAGCTGGTCCTCCGCgggggggTCGGCGTCGATGGTGAAGATGCCCGGTAGC 6621 ||| ||| ||||| ||| | |||||||| ||||| | ||| |||| || || ||| Sbjct 70 AGGG-GTCTAGCTGCGTCTCGTCCGGGGGGTCTGCGTCCACGGTAAAGACCCCGGGCAGC 128 Query 6622 AGGTGGCGGTCGAAGTAGTCGATGGCGACCGCGGGGTCGGCGAGGGCGCGTTCCCAGTCC 6681 ||| | |||||||||||| || | | | | | || || | | ||| | Sbjct 129 AGGCGCGCGTCGAAGTAGTCTATCTTGCATCCTTGCAAGTCTAGCGCCTGCTGCCATGCG 188 Query 6682 CTGACCGCCAGGGCGCGCTCGTAGGGGTTGAG-GGGCGCCCCCCAGGGCATGGGA-TGGG 6739 | | | || || ||||||||||| |||||||| ||| | ||||| |||||||| |||| Sbjct 189 CGGGCGGCAAGCGCGCGCTCGTATGGGTTGAGTGGGGGGACCCCATGGCATGGGGGTGGG 248 Query 6740 TGAGGGCCGAGGCGTACATGCCGCAGA-TGTCGTAGACGTAGAGGGG-CTCGCGGAGCAC 6797 |||| || ||||||||||||||||| | ||||||| ||||||||||| ||| | ||| | Sbjct 249 TGAGCGCGGAGGCGTACATGCCGCAAAATGTCGTAAACGTAGAGGGGGCTCTCTGAGTAT 308 Query 6798 GCCGAGGTAGGTGGGATAGCAGCGTCCGCCGCGGATGCTGGCGCGCACGTAGTCGTACAT 6857 || || || || || ||||| | ||| |||||||||||||| |||||||| ||||| | Sbjct 309 TCCAAGATATGTAGGGTAGCATCTTCCACCGCGGATGCTGGCNCGCACGTAATCGTATAG 368 Query 6858 CTCGTG-CGAGGG--GGCGAGGAGG 6879 ||||| |||||| | |||||||| Sbjct 369 TTCGTGCCGAGGGGAGCCGAGGAGG 393 >seq169466 Length=306 Score = 228 bits (252), Expect = 2e-55 Identities = 222/282 (79%), Gaps = 3/282 (1%) Strand=Plus/Minus Query 14373 GGCAG-AACGGGGTGCTGGAGAGCGACA-TCGGGGTGAAGTTTGACACGCGCAACTTCCG 14430 ||||| |||||||| ||||| |||||| ||||||| ||||||||||| ||||||||| | Sbjct 300 GGCAGGAACGGGGTTCTGGAAAGCGACNGTCGGGGTAAAGTTTGACACCCGCAACTTCAG 241 Query 14431 GCTGGGCTGGGACCCGGTCACCAAGCTGGTCATGCCCG-GCGTGTACACCAACGAGGCCT 14489 ||||| | ||||| ||||| || ||||||||| | || || || ||||| |||| Sbjct 240 ACTGGGGTTTGACCCAGTCACTGGTCTTGTCATGCCCTAGAGTATATACAAACGAAGCCT 181 Query 14490 TCCACCCCGACATCGTCCTGCTGCCCGGCTGCGGCGTGGACTTCACGCAGAGCCGGCTGA 14549 |||| || |||||| | ||||||| | ||| ||||||||||| || ||||| |||| Sbjct 180 TCCATCCAGACATCATTTTGCTGCCGGATCCCGGGGTGGACTTCACCCACAGCCGCCTGA 121 Query 14550 GCAACCTGCTGGGGATCCGCAAGCGGATGCCCTTCCAGGCGGGTTTTCAGATCATGTACG 14609 ||||| || |||| |||||||||||| |||||||||| ||| ||| ||||| |||| Sbjct 120 GCAACTTGTTGGGCATCCGCAAGCGGCAACCCTTCCAGGAGGGCTTTAGGATCACCTACG 61 Query 14610 AGGACCTGGAGGGCGGCAACATCCCCGCCTTGCTAGACGTGG 14651 | ||||||||||| || ||||| ||||| || | || |||| Sbjct 60 ATGACCTGGAGGGTGGTAACATTCCCGCACTGTTGGATGTGG 19 >seq170248 Length=157 Score = 113 bits (124), Expect = 9e-21 Identities = 118/155 (76%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 11050 AGGAGCCCGAGGAGATGAGGGACCGCAGGTTTCACGCGGGGCGGGAGCTGCGCGCGGGCT 11109 ||||||||||||||||| |||| || | ||| ||||| ||||| |||||||| ||| Sbjct 155 AGGAGCCCGAGGAGATGCGGGATCGAAAGTTCCACGCAGGGCGCGAGCTGCGGCATGGCC 96 Query 11110 TCGACCGTCGGCGGGTGTTGCGCGCCGAAGACTTCGAGCCCGACGAGCGCAGCGGAGTAA 11169 | | || |||| || |||||| || ||||| |||||||||| ||| | ||| | | Sbjct 95 TGAATCGCGAGCGGTTGCTGCGCGAGGAGGACTTTGAGCCCGACGCGCGAACCGGGATTA 36 Query 11170 GTCCGGCACGGGCGCACGTGTCGGCGGCCAACCTG 11204 |||| || || || |||||| |||| ||| ||||| Sbjct 35 GTCCCGCGCGCGCACACGTGGCGGCCGCCGACCTG 1 >seq169021 Length=202 Score = 84.2 bits (92), Expect = 4e-12 Identities = 67/81 (83%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 6151 TCGGCGCTGAGGGTGTCAGTTTCCACGAACGAGGTGGATTTGATATTGACCTGTCCGGCG 6210 || ||||| || |||||||||||| ||||||| |||||||||||| ||||| || ||| Sbjct 119 TCTGCGCTAAGATTGTCAGTTTCCAAAAACGAGGAGGATTTGATATTCACCTGGCCCGCG 178 Query 6211 GCGATGCTTTTGACGGTGGCG 6231 | ||||| ||||| |||| || Sbjct 179 GTGATGCCTTTGAGGGTGCCG 199 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 101803470871200