Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Serinus_20canaria_20[refseq_20GCF_5F000534875.1_202014-01-15] 304,400 sequences; 1,152,100,110 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq19 127 2e-24 seq204287 125 5e-24 seq23300 122 7e-23 >seq19 Length=13664266 Score = 127 bits (140), Expect = 2e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || |||| || |||||||| | ||| || |||||||| || || ||||| || || | Sbjct 12085326 CCACCCCGCAGGCGCAGCACGAGATGCAGTGTGGATTCCTTCTGGATGTTGTAGTCAGAG 12085385 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | ||| || ||| || || || ||||||||| | |||| || ||||| || || || Sbjct 12085386 AGGGTACGGCCATCCTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGG 12085445 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 || || || |||||||| | || |||||| |||| | |||||| | || || Sbjct 12085446 ATGCCTTCCTTGTCTTGGATCTTGGCCTTGACATTTTCAATGGTGTCACTGGGCTCGACC 12085505 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 ||||| || || || |||||||| ||||| || || || ||||||||||| Sbjct 12085506 TCAAGGGTGATGGTCTTGCCAGTCAAGGTCTTGACGAAGATCTGCATTTT 12085555 >seq204287 Length=600 Score = 125 bits (138), Expect = 5e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || || |||| ||||||||||| || || |||||||| || || ||||| ||||| | Sbjct 65 CCACCTCTCAGACGCAGCACCAGGTGCAGGGTGGATTCCTTCTGGATGTTGTAATCTGAC 124 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | ||| ||| ||| || || || |||||||| | |||| || ||||| || || || Sbjct 125 AGGGTACGACCATCCTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGGTCGGGAGGG 184 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 ||||| || ||||| || | || || ||| | || | |||||| | || ||| Sbjct 185 ATACCTTCCTTGTCCTGGATCTTGGCCTTCACATTCTCGATGGTGTCACTGGGCTCGACT 244 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || || || ||||| |||||||| | ||| || ||||| |||||||| Sbjct 245 TCCAGGGTGATAGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 291 >seq23300 Length=271 Score = 122 bits (134), Expect = 7e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || || |||| ||||||||||| || || |||||||| || || ||||| ||||| | Sbjct 233 CCACCTCTCAGACGCAGCACCAGGTGCAGGGTGGATTCCTTCTGGATGTTGTAATCTGAC 174 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | ||| ||| ||| || || || || || ||| | |||| || ||||| || || ||| Sbjct 173 AGGGTACGACCATCTTCCAGCTGCTTCCCTGCAAAGATCAGCCTCTGCTGGTCGGGGGGA 114 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 || ||||| ||||| || | || || ||| | || | |||||| | || ||| Sbjct 113 ATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCGACT 54 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || || || || || |||||||| | ||| || ||||| |||||||| Sbjct 53 TCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 7 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 383790084920400