Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Serinus_20canaria_20[refseq_20GCF_5F000534875.1_202014-01-15] 304,400 sequences; 1,152,100,110 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq204287 143 3e-29 seq19 127 2e-24 seq29 123 2e-23 seq23300 122 8e-23 seq77 107 2e-18 >seq204287 Length=600 Score = 143 bits (158), Expect = 3e-29 Identities = 150/197 (76%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523 || ||||||||||| || ||||| || || ||| | || || ||||||||||| Sbjct 323 GTTGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCCAGCTGCTTGCCA 382 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTG 133583 ||| | || |||| |||||||||||||||||| ||||||||||| |||||| ||| Sbjct 383 GCGAAGATCAGCCTCTGCTGGTCGGGAGGGATACCTTCCTTGTCCTGGATCTTGGCCTTC 442 Query 133584 AGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTT 133643 | | ||| | ||||| ||||||| || || | |||| ||| ||||| ||||| ||| Sbjct 443 ACATTCTCGATGGTGTCACTGGGCTCAACCTCCAGAGTGATGGTCTTGCCAGTCAGGGTT 502 Query 133644 TTTACGAAAATCTGCAT 133660 |||||||| |||||||| Sbjct 503 TTTACGAAGATCTGCAT 519 Score = 136 bits (150), Expect = 4e-27 Identities = 151/199 (76%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 |||||| || ||||| || |||||||| || || ||| | ||||| |||||||||| Sbjct 94 GGTGGATTCCTTCTGGATGTTGTAATCTGACAGGGTACGACCA-TCCTCCAGCTGCTTGC 152 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | ||| | || |||| |||||||||||||||||| ||||||||||| |||||| || Sbjct 153 CAGCGAAGATCAGCCTCTGCTGGTCGGGAGGGATACCTTCCTTGTCCTGGATCTTGGCCT 212 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 | | | ||| | ||||| ||||||| || || | ||||| || ||||| ||||| | Sbjct 213 TCACATTCTCGATGGTGTCACTGGGCTCGACTTCCAGGGTGATAGTCTTGCCAGTCAGGG 272 Query 133642 TTTTTACGAAAATCTGCAT 133660 | || || || |||||||| Sbjct 273 TCTTCACAAAGATCTGCAT 291 >seq19 Length=13664266 Score = 127 bits (140), Expect = 2e-24 Identities = 121/155 (78%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 133506 TCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTG 133565 ||||| ||||||||||| || | || |||| ||||||||| |||||||||||||||||| Sbjct 12085398 TCCTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGGATGCCTTCCTTG 12085457 Query 133566 TCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACG 133625 || |||||| ||||| | |||| ||||| ||||||| || || | ||||| | Sbjct 12085458 TCTTGGATCTTGGCCTTGACATTTTCAATGGTGTCACTGGGCTCGACCTCAAGGGTGATG 12085517 Query 133626 GTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCAT 133660 || ||||| |||| || || ||||| |||||||| Sbjct 12085518 GTCTTGCCAGTCAAGGTCTTGACGAAGATCTGCAT 12085552 Score = 120 bits (132), Expect = 3e-22 Identities = 147/198 (74%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 || ||||| ||||| |||||||| || | ||| | | | || || ||||||||||| Sbjct 12085128 GTTGACTCCTTCTGGATATTGTAGTCAGAGAGGGTGCGGCCA-TCTTCCAGCTGCTTGCC 12085186 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || | || |||| ||||||||| |||||||||||||||||||| |||||| || Sbjct 12085187 AGCAAAGATCAGCCTCTGCTGGTCAGGAGGGATGCCTTCCTTGTCTTGGATCTTGGCTTT 12085246 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | ||||| ||||| |||| || || || | |||| ||| ||||| ||||| || Sbjct 12085247 GACATTCTCAATGGTGTCACTGGGTTCGACTTCCAGAGTGATGGTCTTGCCAGTCAGGGT 12085306 Query 133643 TTTTACGAAAATCTGCAT 133660 || || || |||||||| Sbjct 12085307 CTTGACAAAGATCTGCAT 12085324 >seq29 Length=9066916 Score = 123 bits (136), Expect = 2e-23 Identities = 146/198 (74%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCC 133522 |||||| || ||||| || |||||||| || ||| | ||||| ||||||||||| Sbjct 5720051 GGTGGATTCCTTCTGGATGTTGTAATCTGACAGGGTGCGCCCATCCTCCAGCTGCTTGCC 5719992 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || | || |||| ||||||||| || || ||||| |||||||| |||||| ||| Sbjct 5719991 AGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATGCCCTCCTTGTCCTGGATCTTGGCCTT 5719932 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 | | ||| | ||||| ||||||| || || | ||||| ||| ||||| ||||| || Sbjct 5719931 CACATTCTCGATGGTGTCACTGGGCTCAACCTCCAGGGTGATGGTCTTGCCAGTCAGGGT 5719872 Query 133643 TTTTACGAAAATCTGCAT 133660 || || || |||||||| Sbjct 5719871 CTTCACAAAGATCTGCAT 5719854 Score = 109 bits (120), Expect = 5e-19 Identities = 145/199 (73%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 || ||||||||||| || ||||| || | || ||| | || || ||||||||||| Sbjct 5719822 GTTGACTCTTTCTGGATGTTGTAGTCAGAGAGAGTACGACCA-TCTTCCAGCTGCTTGCC 5719764 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| | || | || |||||| || ||||| ||||| |||||||| |||||| ||| Sbjct 5719763 AGCGAAGATCAACCTCTGCTGATCTGGAGGAATGCCCTCCTTGTCCTGGATCTTGGCCTT 5719704 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 | | ||| | ||||| |||||||||| || | ||||| || || || ||||| || Sbjct 5719703 CACATTCTCGATGGTGTCACTGGGCTCCACCTCAAGGGTGATAGTCTTTCCAGTCAGGGT 5719644 Query 133643 TTTTACGAAAATCTGCATG 133661 || || || ||||||||| Sbjct 5719643 CTTCACAAAGATCTGCATG 5719625 >seq23300 Length=271 Score = 122 bits (134), Expect = 8e-23 Identities = 148/199 (74%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 |||||| || ||||| || |||||||| || || ||| | || || |||||||| | Sbjct 204 GGTGGATTCCTTCTGGATGTTGTAATCTGACAGGGTACGACCA-TCTTCCAGCTGCTTCC 146 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | || | || |||| |||||||||||| || ||||| |||||||| |||||| || Sbjct 145 CTGCAAAGATCAGCCTCTGCTGGTCGGGGGGAATGCCCTCCTTGTCCTGGATCTTGGCCT 86 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 | | | ||||| ||||| ||||||| || || | ||||| ||| ||||| ||||| | Sbjct 85 TCACATTCTCAATGGTGTCACTGGGCTCGACTTCCAGGGTGATGGTCTTGCCAGTCAGGG 26 Query 133642 TTTTTACGAAAATCTGCAT 133660 | || || || |||||||| Sbjct 25 TCTTCACAAAGATCTGCAT 7 >seq77 Length=1106213 Score = 107 bits (118), Expect = 2e-18 Identities = 91/112 (81%), Gaps = 0/112 (0%) Strand=Plus/Minus Query 148864 tGTACTCTACGATCTCGGCGCACAGATTGCTGCATTTGATCACGCCCACGTTCTTTTGAT 148923 ||||||| || ||||| | |||||| |||||||||||||| ||||| ||||| || | Sbjct 1101076 TGTACTCCACAATCTCAGTGCACAGGTTGCTGCATTTGATGGTGCCCAGGTTCTGCTGGT 1101017 Query 148924 TGCTCTTGCTGTTGCACGCGTCCTTGTACAGCATGTACGGTCCGCCAGTTTC 148975 ||||||| |||||||| | ||||||||| |||||||| || |||||| || Sbjct 1101016 TGCTCTTCCTGTTGCAAGAGTCCTTGTAGAGCATGTAGGGGGTGCCAGTCTC 1100965 Score = 96.9 bits (106), Expect = 3e-15 Identities = 131/183 (72%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 148499 GCCCTCGTACGAGCTGTACGGTCCGTGCGCCGCCGCCAGTTCGCAGCTCGCCTCGAGCGC 148558 ||||| ||| | | ||| || || ||| || ||||| || ||||| ||||| || || Sbjct 1102951 GCCCTGGTAGGTGTCGTAGGGGCCCTGCTCCTTGGCCAGCTCACAGCTGGCCTCCAGGGC 1102892 Query 148559 GCCGTAGTAAATCGTCTCGGCAATTTGCCTGTTGAGCAGCGCCGCCGACTCGCTTTCGTA 148618 |||||||| || |||||| || ||| |||||| || |||| |||| ||| | Sbjct 1102891 CCCGTAGTAGATGGTCTCGAAGATGTGCTGGTTGAGGCGCTGCGCCTCGGCGCTCTCGAA 1102832 Query 148619 CGGCATACGCAGCCGCACAAACGCGTCGGCAAGGCCCTGTACGCCCACGCCAATGGGCCG 148678 || | | || | | | || ||||| || |||||||| ||||| | |||||||||||| Sbjct 1102831 GGGGAACCTCATCAGGATGAAGGCGTCAGCCAGGCCCTGCACGCCGATGCCAATGGGCCG 1102772 Query 148679 GTG 148681 ||| Sbjct 1102771 GTG 1102769 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 481581383856000