Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Serinus_20canaria_20[refseq_20GCF_5F000534875.1_202014-01-15] 304,400 sequences; 1,152,100,110 total letters Query= NC_024696.1 Length=180800 Score E Sequences producing significant alignments: (Bits) Value seq13 120 4e-22 >seq13 Length=17727969 Score = 120 bits (132), Expect = 4e-22 Identities = 243/356 (68%), Gaps = 6/356 (2%) Strand=Plus/Plus Query 162640 CGCACCATCTCTAGATTGGTCTTAAGGGGAAAGTCGGTGCCGCAGAGATTAATAACATAT 162699 || |||||||| |||||||| | ||| ||||||||||||||| || || | || Sbjct 2540077 CGGACCATCTCGGCGTTGGTCTTGATGGGGAAGTCGGTGCCGCAGGTGTTGATGAGGTAG 2540136 Query 162700 TTCCACTTAACGCTGAGTCCGTAC-AGATCCTGTAGACAGTTCAGATCGGCCTGGACGCG 162758 ||| ||| | || | | || ||||| | ||||| || |||||||| || | Sbjct 2540137 CGCCATGGCACGGGGC-TCTGCAGGAGGTCCTGCATGCAGTTGAGGTCGGCCTGCACCCT 2540195 Query 162759 ACTCCACGACGCGTACACGACGCTCTCCAACCTAGTGGCGACAAAGACATTGTCGAAACA 162818 ||| || || || || ||||| |||| | |||| || ||||||||| ||| || Sbjct 2540196 GGACCAGGAGGCATAGACCACGCTTTCCAGGCGGCTGGCCACGAAGACATTGGGGAAGCA 2540255 Query 162819 CGAAACTATCCCCATCACGGCCAGTGAGAA--CATCGGGTCCGCTTTCCTATCTACGTGT 162876 | | | || || |||||||| ||| | | || | ||| || ||||| || Sbjct 2540256 GGCAGCAATGGCCCTCACGGCCTCCTGGAAGGCTGCCGGG--GATTTGCTGTCTACATGG 2540313 Query 162877 ACGCAGTATAGATTCTGAGGGGCGTAGATGGCCCTCAGTAATCTCTCGAACATCTCTATC 162936 |||||||| | ||||| |||||||||| || || ||| | | ||| ||||| || || Sbjct 2540314 ACGCAGTAAACGTTCTGGGGGGCGTAGACGGACCGCAGGAGCCGCTCAAACATGTCAATT 2540373 Query 162937 TTATGGTGTACCACGATAGAATACGCTATGGGGAACTCAGCCTCCTCGCGACTGAG 162992 || ||||| | | || || || || ||||||||||| ||||||| | ||||| Sbjct 2540374 TTGTGGTGGATGATCATGGAGTAGGCGATGGGGAACTCCTCCTCCTCCTGGCTGAG 2540429 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 576231066240000