Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Serinus_20canaria_20[refseq_20GCF_5F000534875.1_202014-01-15] 304,400 sequences; 1,152,100,110 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq204287 102 2e-16 seq29 93.3 1e-13 >seq204287 Length=600 Score = 102 bits (112), Expect = 2e-16 Identities = 139/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| || || || || || |||||| |||| || || |||||| |||| Sbjct 504 AAAACCCTGACTGGCAAGACCATCACTCTGGAGGTTGAGCCCAGTGACACCATCGAGAAT 445 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||| || || || ||||| || || ||| || || || |||||| Sbjct 444 GTGAAGGCCAAGATCCAGGACAAGGAAGGTATCCCTCCCGACCAGCAGAGGCTGATCTTC 385 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || |||||| |||||||||| | || || | || |||||| ||||||||||||| Sbjct 384 GCTGGCAAGCAGCTGGAAGATGGGCGCACCCTGTCTGACTACAACATCCAGAAAGAGTCA 325 Query 206365 ACTCTTCACCTTGT 206378 ||||| |||||||| Sbjct 324 ACTCTGCACCTTGT 311 Score = 91.5 bits (100), Expect = 3e-13 Identities = 71/85 (84%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 204764 ACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCCTTCCATCTTCC 204823 |||||||| ||||| ||||||||||||| || ||||||| || || | ||||||||| Sbjct 311 ACAAGGTGCAGAGTTGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCC 370 Query 204824 AGCTGCTTTCCGGCGAAGATAAGCC 204848 |||||||| || |||||||| |||| Sbjct 371 AGCTGCTTGCCAGCGAAGATCAGCC 395 >seq29 Length=9066916 Score = 93.3 bits (102), Expect = 1e-13 Identities = 144/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| || || || || ||||| || ||||| | || ||||| |||| Sbjct 5719629 CAGATCTTTGTGAAGACCCTGACTGGAAAGACTATCACCCTTGAGGTGGAGCCCAGTGAC 5719688 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || |||| || ||| ||||| || || || || || ||| || || || Sbjct 5719689 ACCATCGAGAATGTGAAGGCCAAGATCCAGGACAAGGAGGGCATTCCTCCAGATCAGCAG 5719748 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 || | |||||||| || |||||| |||||||||| | ||| | | || |||||| || Sbjct 5719749 AGGTTGATCTTCGCTGGCAAGCAGCTGGAAGATGGTCGTACTCTCTCTGACTACAACATC 5719808 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378 ||||||||||| ||||| |||||||| Sbjct 5719809 CAGAAAGAGTCAACTCTGCACCTTGT 5719834 Score = 87.8 bits (96), Expect = 4e-12 Identities = 75/93 (81%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 204764 ACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCCTTCCATCTTCC 204823 |||||||| ||||| ||||||||||||| || ||||||| | ||| | ||||||||| Sbjct 5719834 ACAAGGTGCAGAGTTGACTCTTTCTGGATGTTGTAGTCAGAGAGAGTACGACCATCTTCC 5719775 Query 204824 AGCTGCTTTCCGGCGAAGATAAGCCGTTGTTGA 204856 |||||||| || |||||||| | || || ||| Sbjct 5719774 AGCTGCTTGCCAGCGAAGATCAACCTCTGCTGA 5719742 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1177211551152400