Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Serinus_20canaria_20[refseq_20GCF_5F000534875.1_202014-01-15] 304,400 sequences; 1,152,100,110 total letters Query= NC_027016.1 Length=226084 Score E Sequences producing significant alignments: (Bits) Value seq10 127 3e-24 >seq10 Length=27271039 Score = 127 bits (140), Expect = 3e-24 Identities = 133/175 (76%), Gaps = 0/175 (0%) Strand=Plus/Plus Query 214049 ATGGTTTACGAACCCAGCGTTCCCGAAAAGTTACGTTTCGCACTGGGTAACGAGATGTTT 214108 ||| | ||| |||| ||| ||||| | | || ||| | |||| | ||| |||| Sbjct 2970367 ATGCTGTACCCACCCCACGTGCCCGAGCACCTGCGCTTCTCCGTGGGGCAGGAGGTGTTC 2970426 Query 214109 GGACTCGTGCCCGGTTTCATGGTGTACGCCATTATCTGGCTGAGAGAGCACAACAGGGTT 214168 || || |||||||| ||||| ||||||||| ||||||||| | ||||||||| | || Sbjct 2970427 GGGCTGGTGCCCGGGCTCATGATGTACGCCACGATCTGGCTGCGCGAGCACAACCGCGTC 2970486 Query 214169 TGCGACGTGCTGAAACAAGAGCACCCGGAATGGAACGACGAACAGCTGTTCCAGA 214223 ||||||||||| || || ||||||| || ||| ||||||| ||||| ||||||| Sbjct 2970487 TGCGACGTGCTCAAGCACCAGCACCCCGAGTGGGACGACGAGCAGCTCTTCCAGA 2970541 Score = 98.7 bits (108), Expect = 1e-15 Identities = 195/289 (67%), Gaps = 0/289 (0%) Strand=Plus/Plus Query 214605 AAGGAGATAGCTGTCGAGCTGGAGGCCTTCTACGGTGATATCGAAGCCGTCGAACTCTAC 214664 || ||||| || | |||||||||| | ||||| || ||||| ||| | || || ||| Sbjct 2972203 AAAGAGATGGCAGCGGAGCTGGAGGAGCTGTACGGGGACATCGATGCCATGGAGCTGTAC 2972262 Query 214665 GCTGATTTCCTCGCTGAAAAACCGTGTCCCGATGCCATCCTCGGTGACGGCGTCCTCGAG 214724 | | | || | || || || | |||| |||||| | || || | | | ||| Sbjct 2972263 CCAGGCCTGCTGGTGGAGAAGCCCCGGCCCGGGGCCATCTTTGGCGAGACCATGGTGGAG 2972322 Query 214725 TCGGGGGCTCCGTTCTCCCTGAGGGGACTCGCGGCGAACGTCATCTGCTCCCCGGGCTAC 214784 ||| || ||||||||||||| ||| || || |||| |||||||||||| | ||| Sbjct 2972323 ATGGGAGCACCGTTCTCCCTGAAGGGGCTGATGGGCAACGCCATCTGCTCCCCCGAGTAC 2972382 Query 214785 TGGAAACGCAACACACTCGGTAGCTCCGCGAGTTTCAACATCGTGAGGAGCGCGACCCTT 214844 ||||| | || ||| | || || | | | ||| ||||| | | | || |||| Sbjct 2972383 TGGAAGCCCAGCACCTTTGGGGGCAAGGTGGGCTTCGACATCATCAACACGGCCTCCCTG 2972442 Query 214845 CAGTCTCTCATCTGTAGCAACGTCAAGGGATGTCCGTTAGCCGCATTCC 214893 ||| |||||||| | |||||| || || ||||| || | || |||| Sbjct 2972443 CAGAAGCTCATCTGCAACAACGTGAAAGGCTGTCCCTTCACTGCCTTCC 2972491 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 720588488256000