Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Serinus_20canaria_20[refseq_20GCF_5F000534875.1_202014-01-15] 304,400 sequences; 1,152,100,110 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq77 91.5 2e-13 seq1 82.4 1e-10 >seq77 Length=1106213 Score = 91.5 bits (100), Expect = 2e-13 Identities = 112/153 (73%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 111265 CTCATCCTTATCTGTGTACTCTAAAATTTCTGTACATAAGTTGGAACTCTTAATCGTCCC 111324 ||| ||||| |||||||| | ||| || || || | |||| | || || || || Sbjct 1101090 CTCGTCCTTGCTGGTGTACTCCACAATCTCAGTGCACAGGTTGCTGCATTTGATGGTGCC 1101031 Query 111325 CAAATTCTTTTGGTTACTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCC 111384 || |||| ||||| |||||| ||||||| | |||||||||||||||||||| || || Sbjct 1101030 CAGGTTCTGCTGGTTGCTCTTCCTGTTGCAAGAGTCCTTGTAGAGCATGTAGGGGGTGCC 1100971 Query 111385 CGTCTCCGTCTGTGATTTGAGAATAGCCTTCCA 111417 ||||| ||||| || | || || || | ||| Sbjct 1100970 AGTCTCGGTCTGGGACTCGATGATGGCGTACCA 1100938 >seq1 Length=88717973 Score = 82.4 bits (90), Expect = 1e-10 Identities = 94/124 (76%), Gaps = 2/124 (2%) Strand=Plus/Plus Query 122678 CCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACCCCGCTTCT 122737 ||||||||| | |||||||||||| ||||| | || ||||| || |||| ||||| Sbjct 70129874 CCTCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAATCCAGGCATCAGGCCCCTCTTCT 70129933 Query 122738 TCAACCAATAAATAGC-GCAGAATGACCCGGAGAAGAAGATACCCTCCACACACGCAAAC 122796 ||| |||| | ||||| ||| || || || || |||||||| || ||||| ||||| Sbjct 70129934 TCAGCCAAAATATAGCAGCA-AAGGAACCCGAAAAGAAGATGCCTTCCACTGCAGCAAAG 70129992 Query 122797 GCAA 122800 |||| Sbjct 70129993 GCAA 70129996 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 625642338240000