Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Serinus_20canaria_20[refseq_20GCF_5F000534875.1_202014-01-15] 304,400 sequences; 1,152,100,110 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq19 152 2e-31 seq204287 140 1e-27 seq29 113 1e-19 seq69 95.1 4e-14 seq23 95.1 4e-14 seq2 89.7 2e-12 >seq19 Length=13664266 Score = 152 bits (168), Expect = 2e-31 Identities = 171/229 (75%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 140509 TACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAG 140568 ||||||| || | | || ||||| || ||||| ||||| || || ||||| || |||| Sbjct 12085096 TACCACCCCGCAGGCGCAGGACAAGGTGCAGAGTTGACTCCTTCTGGATATTGTAGTCAG 12085155 Query 140569 ATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAG 140628 | | || || |||||||| || || || ||||||||||| || | ||||| ||||||| Sbjct 12085156 AGAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGAG 12085215 Query 140629 GAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAA 140688 | || ||||| || || || || || ||||| ||||| ||||| | ||| ||||| | Sbjct 12085216 GGATGCCTTCCTTGTCTTGGATCTTGGCTTTGACATTCTCAATGGTGTCACTGGGTTCGA 12085275 Query 140689 CTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 |||| || || | ||||| || || || || || ||||| |||||||| Sbjct 12085276 CTTCCAGAGTGATGGTCTTGCCAGTCAGGGTCTTGACAAAGATCTGCAT 12085324 Score = 122 bits (134), Expect = 3e-22 Identities = 166/232 (72%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 ||||||||| || | | || || ||||| || || || || || || || || || || Sbjct 12085322 CATACCACCCCGCAGGCGCAGCACGAGATGCAGTGTGGATTCCTTCTGGATGTTGTAGTC 12085381 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 ||| | || || ||||| || || || || ||||||||||| || | ||||| ||||| Sbjct 12085382 AGAGAGGGTACGGCCATCCTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGG 12085441 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 ||| || ||||| || || || || || || || ||||| ||||| | ||| || || Sbjct 12085442 AGGGATGCCTTCCTTGTCTTGGATCTTGGCCTTGACATTTTCAATGGTGTCACTGGGCTC 12085501 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCATT 140738 || ||||| || | ||||| || || | || || || || ||||||||| Sbjct 12085502 GACCTCAAGGGTGATGGTCTTGCCAGTCAAGGTCTTGACGAAGATCTGCATT 12085553 >seq204287 Length=600 Score = 140 bits (154), Expect = 1e-27 Identities = 158/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 140526 AGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCT 140585 || ||||| || ||||| |||||||| || || || || ||||| | || ||||||||| Sbjct 308 AGGACAAGGTGCAGAGTTGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCT 367 Query 140586 TCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCC 140645 || || || || ||||| ||||| || | ||||| || ||||| || ||||| || ||| Sbjct 368 TCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGGTCGGGAGGGATACCTTCCTTGTCC 427 Query 140646 TGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTC 140705 || || || || || ||||| || || | ||| || ||||| || || || | ||| Sbjct 428 TGGATCTTGGCCTTCACATTCTCGATGGTGTCACTGGGCTCAACCTCCAGAGTGATGGTC 487 Query 140706 TTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || || || |||||||| || |||||||| Sbjct 488 TTGCCAGTCAGGGTTTTTACGAAGATCTGCAT 519 >seq29 Length=9066916 Score = 113 bits (124), Expect = 1e-19 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 140526 AGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCT 140585 || || || || || || || || || || || || ||||| || | || |||||||| Sbjct 5720065 AGCACCAGGTGCAGGGTGGATTCCTTCTGGATGTTGTAATCTGACAGGGTGCGCCCATCC 5720006 Query 140586 TCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCC 140645 || || || || ||||||||||| || | ||||| || || ||||| || || || ||| Sbjct 5720005 TCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATGCCCTCCTTGTCC 5719946 Query 140646 TGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTC 140705 || || || || || ||||| || || | ||| || ||||| || || || | ||| Sbjct 5719945 TGGATCTTGGCCTTCACATTCTCGATGGTGTCACTGGGCTCAACCTCCAGGGTGATGGTC 5719886 Query 140706 TTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || || || || || ||||| |||||||| Sbjct 5719885 TTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 5719854 >seq69 Length=2245672 Score = 95.1 bits (104), Expect = 4e-14 Identities = 103/137 (75%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 349610 GCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCT 349669 ||||| | ||||| ||||||||||| || || ||||||| || || ||||||||| Sbjct 684109 GCTGTGGTGACTGTCCCAGCCTATTTCAACGACTCCCAGCGCCAGGCCACCAAAGATGCT 684168 Query 349670 GGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATT 349729 || | |||||| ||| | || || || ||||| || || || ||||| || || || ||| Sbjct 684169 GGAACCATTGCAGGGCTCAACGTGCTGAGAATCATCAACGAGCCCACAGCAGCTGCCATT 684228 Query 349730 GCATATGGGCTTGATAA 349746 || || ||||| || || Sbjct 684229 GCCTACGGGCTGGACAA 684245 >seq23 Length=11135842 Score = 95.1 bits (104), Expect = 4e-14 Identities = 125/173 (72%), Gaps = 3/173 (2%) Strand=Plus/Plus Query 349715 ACTGCTGCAGCAATTGCATATGGGCTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTT 349774 || ||||| || ||||| ||||| || || || ||| || ||| || || || ||| Sbjct 796995 ACAGCTGCTGCCATTGCTTATGGACTGGACAA---GAGAGAGGGAGAGAAGAACATCCTT 797051 Query 349775 ATTTTTGATTTAGGTGGTGGTACTTTTGATGTATCACTACTAACACTTGAAGAGGGAATT 349834 | || || | || ||||| ||||||||||| || || || ||| |||| | ||| | Sbjct 797052 GTATTCGACCTGGGCGGTGGAACTTTTGATGTGTCCCTCCTCACAATTGACAACGGAGTC 797111 Query 349835 TTTGAAGTTAAAGCAACTGCTGGTGATACACATCTTGGTGGAGAAGATTTTGA 349887 ||||||||| || ||| ||| || || || || ||||||||||| ||||| Sbjct 797112 TTTGAAGTTGTGGCTACTAATGGAGACACTCACCTGGGTGGAGAAGACTTTGA 797164 >seq2 Length=67421796 Score = 89.7 bits (98), Expect = 2e-12 Identities = 97/129 (75%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 223719 ATGCCTCATCTCTTGATATTAATTCATTTGAAAATGTTAATCCAGGCATTAAACCTCTCT 223778 || |||||||||| || | |||||| ||||| || | |||||||||||| ||||| | Sbjct 53986099 ATACCTCATCTCTGCTGATGAGTTCATTAGAAAAAGTCAGTCCAGGCATTAATCCTCTTT 53986040 Query 223779 TTTTCATCCAAAATATTGCGCAAAAAGCTCCTGaaaaaaaTATACCTTCTACACAAGCAA 223838 | |||| |||||| |||| ||||| || ||||| || || ||||| ||| |||| Sbjct 53986039 TCTTCAGCCAAAAAATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCCACAGCTGCAA 53985980 Query 223839 ACGCTACTA 223847 | || |||| Sbjct 53985979 AGGCCACTA 53985971 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1509344718433200