Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Serinus_20canaria_20[refseq_20GCF_5F000534875.1_202014-01-15] 304,400 sequences; 1,152,100,110 total letters Query= NC_028103.1 Length=32939 Score E Sequences producing significant alignments: (Bits) Value seq171425 187 5e-43 seq169466 114 3e-21 >seq171425 Length=537 Score = 187 bits (206), Expect = 5e-43 Identities = 279/384 (73%), Gaps = 17/384 (4%) Strand=Plus/Plus Query 6366 CGTTCATTTGTCCAGCAGAGGCGcccccccTTTCGTGAGCAAAAAGGGGGCAGGATGTCT 6425 || || || |||||||||||||| || ||||| || ||||| || || || ||| |||| Sbjct 19 CGCTCGTTGGTCCAGCAGAGGCGGCCGCCCTTGCGCGAGCAGAATGGCGGTAGGG-GTCT 77 Query 6426 AGCAAGTTTTCGTCgggggggTCCGCGTCTATTGTAAAAATGCCGGGCAAAAGCAAGCG- 6484 ||| | ||||| |||||||| ||||| | ||||| | ||||||| ||| ||| Sbjct 78 AGCTGCGTCTCGTCCGGGGGGTCTGCGTCCACGGTAAAGACCCCGGGCA---GCAGGCGC 134 Query 6485 --GTCAAAGTAGGATATTTTGGAAGA--GCT-GTTTAGAGCGTCCTGCCAGTTTTTGGCC 6539 ||| |||||| ||| ||| | || || ||| || | |||||| ||| Sbjct 135 GCGTCGAAGTAGTCTATCTTGCATCCTTGCAAGTCTAGCGCCTGCTGCCATGCGCGGGCG 194 Query 6540 GCTAGGGCTCTTTCGAACGGGTTAAG-GGGAGGACCCCAAGGCATGGGA-TGAGTAAGAG 6597 || || || | ||| | ||||| || ||| |||||||| |||||||| || || || | Sbjct 195 GCAAGCGCGCGCTCGTATGGGTTGAGTGGGGGGACCCCATGGCATGGGGGTGGGTGAGCG 254 Query 6598 CAGATGCGTACATTCCACAGA-TGTCATACACATACAGGGGT-TCGGTGAGTACTCCGAG 6655 | || |||||||| || || | |||| || || || ||||| || |||||| ||| || Sbjct 255 CGGAGGCGTACATGCCGCAAAATGTCGTAAACGTAGAGGGGGCTCTCTGAGTATTCCAAG 314 Query 6656 ATAGGTGGGATAGCATCTTCCTCCCCGGATGCTGCTTCGCACGTAATCGTACAGTTCGTG 6715 ||| || || ||||||||||| || ||||||||| |||||||||||||| |||||||| Sbjct 315 ATATGTAGGGTAGCATCTTCCACCGCGGATGCTGGCNCGCACGTAATCGTATAGTTCGTG 374 Query 6716 --GGAGGGAG-CAAGGAAGTTAGG 6736 | ||||| | |||| ||| || Sbjct 375 CCGAGGGGAGCCGAGGAGGTTCGG 398 >seq169466 Length=306 Score = 114 bits (126), Expect = 3e-21 Identities = 179/254 (70%), Gaps = 2/254 (1%) Strand=Plus/Minus Query 14042 GGAAAGCGAGA-TAGGAGTGAAATTTGACACCAGAAACTTTCGGCTCGGTTGGGATCCCG 14100 ||||||||| | || || || ||||||||| | ||||| | || || | || || | Sbjct 283 GGAAAGCGACNGTCGGGGTAAAGTTTGACACCCGCAACTTCAGACTGGGGTTTGACCCAG 224 Query 14101 AAACCCAGCTGGTAATGCCCG-GAGTGTACACTAACGAGGCGTTCCACCCCGATATTGTT 14159 || || || |||||| |||| || || ||||| || ||||| || || || || Sbjct 223 TCACTGGTCTTGTCATGCCCTAGAGTATATACAAACGAAGCCTTCCATCCAGACATCATT 164 Query 14160 TTGCTTCCGGGCTGCGGGGTGGACTTTACCAACAGCAGGCTCAACAATCTTCTGGGCATT 14219 ||||| |||| |||||||||||| ||| ||||| | || | ||| | ||||||| Sbjct 163 TTGCTGCCGGATCCCGGGGTGGACTTCACCCACAGCCGCCTGAGCAACTTGTTGGGCATC 104 Query 14220 CGCAAGCGCCAGCCGTTTCAGGAAGGTTTTCAAATCTTGTACGAAGACCTCGTCGGCGGA 14279 |||||||| || || || ||||| || ||| ||| ||||| ||||| | || || Sbjct 103 CGCAAGCGGCAACCCTTCCAGGAGGGCTTTAGGATCACCTACGATGACCTGGAGGGTGGT 44 Query 14280 AATATCCCCGCCCT 14293 || || ||||| || Sbjct 43 AACATTCCCGCACT 30 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 104902627552800