Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Serinus_20canaria_20[refseq_20GCF_5F000534875.1_202014-01-15] 304,400 sequences; 1,152,100,110 total letters Query= NC_028105.1 Length=35159 Score E Sequences producing significant alignments: (Bits) Value seq171425 277 4e-70 seq169466 219 9e-53 seq170248 114 3e-21 >seq171425 Length=537 Score = 277 bits (306), Expect = 4e-70 Identities = 295/379 (78%), Gaps = 12/379 (3%) Strand=Plus/Plus Query 6276 CTCCGCGCAGACGTTCGTTGGTCCAGCAGAGGCGGCCGCCCTTGCGCGAGCAGAAGGGGG 6335 ||||||| || || ||||||||||||||||||||||||||||||||||||||||| || | Sbjct 8 CTCCGCGTAGGCGCTCGTTGGTCCAGCAGAGGCGGCCGCCCTTGCGCGAGCAGAATGGCG 67 Query 6336 GAAGCACGTCGAGGCGGTTCTCGTCTGGGGGGTCGGCGTCGATGGTAAAGATGCCTGGCA 6395 | || ||| || | ||||||| |||||||| ||||| | |||||||| || |||| Sbjct 68 GTAG-GGGTCTAGCTGCGTCTCGTCCGGGGGGTCTGCGTCCACGGTAAAGACCCCGGGCA 126 Query 6396 GCAGGCGCCGATCAAAGTAGTCGA-CGGGCGTGC--GCATGTCGTCCAGGGCCAGTTGCC 6452 |||||||| || |||||||| | | || | | ||| ||| || ||| | |||| Sbjct 127 GCAGGCGCGCGTCGAAGTAGTCTATCTTGCATCCTTGCA---AGTCTAGCGCCTGCTGCC 183 Query 6453 AGTCTCGGGCGGCCAGCGCGCGCTCGTAGGGATTGAG-CGGCGGTCCCCAGGGCAT-GGG 6510 | | |||||||| |||||||||||||| || ||||| || || ||||| ||||| ||| Sbjct 184 ATGCGCGGGCGGCAAGCGCGCGCTCGTATGGGTTGAGTGGGGGGACCCCATGGCATGGGG 243 Query 6511 ATGGGTAAGGGCCGAGGCATACATGCCGC-AGATGTCGTAGACGTAGA-GGGGCTCCTCC 6568 ||||| || || ||||| |||||||||| | |||||||| ||||||| ||||||| Sbjct 244 GTGGGTGAGCGCGGAGGCGTACATGCCGCAAAATGTCGTAAACGTAGAGGGGGCTCTCTG 303 Query 6569 AGCACGCCGATGTAAGTGGGGTAGCAGCGGCCGCCGCGGATGCTGGCGCGTACGTAATCG 6628 || | || | || || |||||||| | || |||||||||||||| || ||||||||| Sbjct 304 AGTATTCCAAGATATGTAGGGTAGCATCTTCCACCGCGGATGCTGGCNCGCACGTAATCG 363 Query 6629 TACATCTCGTG-CGAGGGG 6646 || | ||||| ||||||| Sbjct 364 TATAGTTCGTGCCGAGGGG 382 >seq169466 Length=306 Score = 219 bits (242), Expect = 9e-53 Identities = 227/294 (77%), Gaps = 3/294 (1%) Strand=Plus/Minus Query 14113 GGCAG-AACGGGGTGCTGGAGAGCGACA-TCGGGGTCAAGTTTGACACCCGCAACTTTAA 14170 ||||| |||||||| ||||| |||||| ||||||| |||||||||||||||||||| | Sbjct 300 GGCAGGAACGGGGTTCTGGAAAGCGACNGTCGGGGTAAAGTTTGACACCCGCAACTTCAG 241 Query 14171 GCTGGGATGGGACCCCGTGACCAAGCTGGTCATGCCCGGG-GTCTACACCAACGAGGCCT 14229 ||||| | ||||| || || || ||||||||| | || || || ||||| |||| Sbjct 240 ACTGGGGTTTGACCCAGTCACTGGTCTTGTCATGCCCTAGAGTATATACAAACGAAGCCT 181 Query 14230 TCCACCCCGACATCGTGCTGCTGCCGGGCTGCGGCGTAGATTTTACCCAGAGCCGGCTGA 14289 |||| || |||||| | ||||||||| ||| || || || ||||| ||||| |||| Sbjct 180 TCCATCCAGACATCATTTTGCTGCCGGATCCCGGGGTGGACTTCACCCACAGCCGCCTGA 121 Query 14290 GCAACCTGCTGGGTATTCGCAAACGGCAGCCGTTCCAGGAGGGTTTTCGCATCATGTACG 14349 ||||| || |||| || ||||| ||||| || ||||||||||| ||| | |||| |||| Sbjct 120 GCAACTTGTTGGGCATCCGCAAGCGGCAACCCTTCCAGGAGGGCTTTAGGATCACCTACG 61 Query 14350 AAGACCTGGAAGGGGGCAACATCCCGGCGCTGCTGGACGTCAAGGCGTACGAGG 14403 | |||||||| || || ||||| || || ||| |||| || | || ||| ||| Sbjct 60 ATGACCTGGAGGGTGGTAACATTCCCGCACTGTTGGATGTGGACGCCTACCAGG 7 >seq170248 Length=157 Score = 114 bits (126), Expect = 3e-21 Identities = 119/156 (76%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 10796 GAGGAGGCGGAGGAAATGCGTGACTGCCGTTTTCGGGCCGGGCGGGAGCTGCGGGCGGGC 10855 |||||| | ||||| ||||| || | || | || ||||| ||||||||| ||| Sbjct 156 GAGGAGCCCGAGGAGATGCGGGATCGAAAGTTCCACGCAGGGCGCGAGCTGCGGCATGGC 97 Query 10856 TTGGAGCGCGAGCGGCTGCTGCGGCCCGAGGACTTTGAGCCCGAGGAGCGCAACGGTATC 10915 || | ||||||||| ||||||| ||||||||||||||||| | ||| | ||| || Sbjct 96 CTGAATCGCGAGCGGTTGCTGCGCGAGGAGGACTTTGAGCCCGACGCGCGAACCGGGATT 37 Query 10916 AGTCCGGCGCGCGCGCACGTCTCGGCCGCCAACCTG 10951 ||||| |||||||| ||||| |||||||| ||||| Sbjct 36 AGTCCCGCGCGCGCACACGTGGCGGCCGCCGACCTG 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 111980948368800