Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Serinus_20canaria_20[refseq_20GCF_5F000534875.1_202014-01-15] 304,400 sequences; 1,152,100,110 total letters Query= NC_028107.1 Length=34064 Score E Sequences producing significant alignments: (Bits) Value seq169466 158 3e-34 seq171425 105 1e-18 seq170248 80.6 6e-11 >seq169466 Length=306 Score = 158 bits (174), Expect = 3e-34 Identities = 212/293 (72%), Gaps = 2/293 (1%) Strand=Plus/Minus Query 13696 AACGGGGTGCTTGAGAGTGATA-TCGGAGTGAAGTTCGATACCCGAAACTTCCGGCTGGG 13754 |||||||| || || || || |||| || ||||| || ||||| |||||| | ||||| Sbjct 294 AACGGGGTTCTGGAAAGCGACNGTCGGGGTAAAGTTTGACACCCGCAACTTCAGACTGGG 235 Query 13755 ATGGGATCCGGTAACGAGGCTGGTGATGCCCGGG-GTGTATACCAACGAAGCTTTTCACC 13813 | || || || || | || || |||||| | || ||||| |||||||| || || | Sbjct 234 GTTTGACCCAGTCACTGGTCTTGTCATGCCCTAGAGTATATACAAACGAAGCCTTCCATC 175 Query 13814 CCGACATCGTACTACTGCCGGGCTGCGGGGTGGACTTTACTCAGAGTCGGCTGAGTAACC 13873 | |||||| | | ||||||| |||||||||||| || || || || ||||| ||| Sbjct 174 CAGACATCATTTTGCTGCCGGATCCCGGGGTGGACTTCACCCACAGCCGCCTGAGCAACT 115 Query 13874 TGCTAGGAATTAGAAAGCGGCGGCCGTTTGAGGTGGGCTTTCAAATTATGTATGAAGACT 13933 || | || || | ||||||| || || ||| ||||||| || | || || ||| Sbjct 114 TGTTGGGCATCCGCAAGCGGCAACCCTTCCAGGAGGGCTTTAGGATCACCTACGATGACC 55 Query 13934 TGGAAGGAGGAAACATTCCCGCCCTTCTGGATGTGCCCGCCTACGAAGCCAGC 13986 |||| || || ||||||||||| || |||||||| ||||||| | || ||| Sbjct 54 TGGAGGGTGGTAACATTCCCGCACTGTTGGATGTGGACGCCTACCAGGCAAGC 2 >seq171425 Length=537 Score = 105 bits (116), Expect = 1e-18 Identities = 130/173 (75%), Gaps = 4/173 (2%) Strand=Plus/Plus Query 6162 CGGCCAGAGCCCTCTCGTACGGATTAAG-GGGAGGACCCCAGGGCATGGGG-TGAGTAAG 6219 |||| || || | |||||| || || || ||| |||||||| ||||||||| || || || Sbjct 193 CGGCAAGCGCGCGCTCGTATGGGTTGAGTGGGGGGACCCCATGGCATGGGGGTGGGTGAG 252 Query 6220 GGCAGAAGCGTACATGCCGCAAA-TGTCGTACACATAAAGAGG-CTGGCGTAGAACGCCG 6277 || || |||||||||||||||| ||||||| || || || || || | || | || Sbjct 253 CGCGGAGGCGTACATGCCGCAAAATGTCGTAAACGTAGAGGGGGCTCTCTGAGTATTCCA 312 Query 6278 ATGTAAGTAGGATAGCAGCGCCCGCCCCGAATGCTGGCCCTGACGTAATCGTA 6330 | || ||||| ||||| | || || || |||||||| | ||||||||||| Sbjct 313 AGATATGTAGGGTAGCATCTTCCACCGCGGATGCTGGCNCGCACGTAATCGTA 365 >seq170248 Length=157 Score = 80.6 bits (88), Expect = 6e-11 Identities = 107/149 (72%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 10437 AGGAGGCCGAGGAGATGCGTGACTGTCGGTTTCGGGCAGGGAAGGAGCTGCGGGCTGGGC 10496 ||||| ||||||||||||| || | ||| | |||||| ||||||||| ||| | Sbjct 155 AGGAGCCCGAGGAGATGCGGGATCGAAAGTTCCACGCAGGGCGCGAGCTGCGGCATGGCC 96 Query 10497 TCGACAGAGAAAAGCTTTTGCGCGCGGAGGATTTTGAACCTGACCAGCGTTCGGGCATCA 10556 | | | || | | |||||| |||||| ||||| || ||| ||| | || || | Sbjct 95 TGAATCGCGAGCGGTTGCTGCGCGAGGAGGACTTTGAGCCCGACGCGCGAACCGGGATTA 36 Query 10557 GTCCGGCCCGCGCCCACGTGACGGCCGCC 10585 |||| || ||||| |||||| |||||||| Sbjct 35 GTCCCGCGCGCGCACACGTGGCGGCCGCC 7 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 108489614452800