Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Serinus_20canaria_20[refseq_20GCF_5F000534875.1_202014-01-15] 304,400 sequences; 1,152,100,110 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq77 96.9 4e-15 >seq77 Length=1106213 Score = 96.9 bits (106), Expect = 4e-15 Identities = 141/194 (73%), Gaps = 4/194 (2%) Strand=Plus/Plus Query 20089 GCGCCACCGGCCGATCGCGATCGGCGTCCAGGGCCTGGCCGACGTTTTCATGATGCTCGG 20148 ||| |||||||| || | |||||||| ||||||||||| |||| ||||| || | | Sbjct 1102765 GCGGCACCGGCCCATTGGCATCGGCGTGCAGGGCCTGGCTGACGCCTTCATCCTGATGAG 1102824 Query 20149 CCTCTCATTCGACGATC-CCAAGGCGC-GCGAGCTCAACAAGGGCATCTTCGAGGCCGTG 20206 || | ||||| || | || |||||| ||| |||||| || |||||||||| || | Sbjct 1102825 GTTCCCCTTCGA-GAGCGCCGAGGCGCAGCG-CCTCAACCAGCACATCTTCGAGACCATC 1102882 Query 20207 TACCACGCGGCCCTCCTGGAATCGTGCGAACTCGCCAAAGAGGACGGCCCGTACGAGACG 20266 ||| ||| |||||| || || || || ||||| ||| | ||||| ||||| || Sbjct 1102883 TACTACGGGGCCCTGGAGGCCAGCTGTGAGCTGGCCAAGGAGCAGGGCCCCTACGACACC 1102942 Query 20267 TTCAAGGGGTCGCC 20280 | | |||| ||||| Sbjct 1102943 TACCAGGGCTCGCC 1102956 Score = 91.5 bits (100), Expect = 2e-13 Identities = 147/205 (72%), Gaps = 10/205 (5%) Strand=Plus/Minus Query 78722 CCGGCGACCCCTTGAACGTCTCGTAAGATCCCTCCTCCTTGGCGAGTTCGCAT---GACT 78778 ||||||| |||| | | || ||||| | |||| ||||||||| || || || | || Sbjct 1102958 CCGGCGAGCCCTGGTAGGTGTCGTAGGGGCCCTGCTCCTTGGCCAGCTCACAGCTGGCCT 1102899 Query 78779 CGAGCAGGGCCGCGTGGTACACAGCCTCGAAGATGCCCTTGTTGAGCTCGC-GCGCCTTG 78837 | ||||||| ||| ||| | | |||||||||| || |||||| ||| |||||| | Sbjct 1102898 C---CAGGGCCCCGTAGTAGATGGTCTCGAAGATGTGCTGGTTGAGG-CGCTGCGCCTCG 1102843 Query 78838 GT-CTCGTCGAACGAAAGGCCGAGCATCATGAAGACATCGGCCAGGCCCTGGACGCCGAT 78896 | ||| ||||| | | | | || |||||| | || ||||||||||| |||||||| Sbjct 1102842 GCGCTC-TCGAAGGGGAACCTCATCAGGATGAAGGCGTCAGCCAGGCCCTGCACGCCGAT 1102784 Query 78897 AGCGATCGGTCGGTGGCGCATGTTG 78921 | || || ||||| ||| |||| Sbjct 1102783 GCCAATGGGCCGGTGCCGCCGGTTG 1102759 Score = 82.4 bits (90), Expect = 8e-11 Identities = 77/98 (79%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 79654 CCGATGCCCCCGGACCACTTGGAGATGTGCGCGCACTCCTTGAGCGTCTCGTAGATGCCC 79713 || |||||||| | ||||||||||| | || |||| ||| || || ||||||||||| Sbjct 1098813 CCAATGCCCCCAGCAGACTTGGAGATGAGGGCACACTGCTTCAGGGTGTCGTAGATGCCT 1098754 Query 79714 TCGATCGAGTCGTCCTTCATAGCGACCAGGAAGCAGCT 79751 ||||| |||||||||||| | |||||||||||| Sbjct 1098753 TCGATGCTGTCGTCCTTCATGCACAGCAGGAAGCAGCT 1098716 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 546437663136000