Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Serinus_20canaria_20[refseq_20GCF_5F000534875.1_202014-01-15] 304,400 sequences; 1,152,100,110 total letters Query= NC_028113.1 Length=35685 Score E Sequences producing significant alignments: (Bits) Value seq171425 232 2e-56 seq169466 223 8e-54 seq169021 80.6 6e-11 >seq171425 Length=537 Score = 232 bits (256), Expect = 2e-56 Identities = 292/389 (75%), Gaps = 12/389 (3%) Strand=Plus/Plus Query 6295 CCGCGCAAGCGCTCGTTGGTCCAGCAGAGGCGGCCGCCTTTGCGTGAACAAAAGGGGGGT 6354 ||||| | |||||||||||||||||||||||||||||| ||||| || || || || ||| Sbjct 10 CCGCGTAGGCGCTCGTTGGTCCAGCAGAGGCGGCCGCCCTTGCGCGAGCAGAATGGCGGT 69 Query 6355 AACACGTCCAGTTGGTCCTCGGGCGGGGGGTCGGCGTCGATGGTGAAGACGCCGGGAAGC 6414 | ||| || || |||| ||||||||| ||||| | ||| ||||| ||||| ||| Sbjct 70 -AGGGGTCTAGCTGCGTCTCGTCCGGGGGGTCTGCGTCCACGGTAAAGACCCCGGGCAGC 128 Query 6415 AAGTGGGAGTCAAAGTAGTCAA--TGGGAACGGATGGCTGGTTGAGGGCGCGCTGCCAGT 6472 | | | | ||| |||||||| | | | | | | || || || || ||||||| Sbjct 129 AGGCGCGCGTCGAAGTAGTCTATCTTGCATC--CTTGCAAGTCTAGCGCCTGCTGCCATG 186 Query 6473 TTTGGGCGGCCCAGGCCCGTTCCAAGGGATTCAGCGGAGGG-CCCCAGGGCAT-GGGGTG 6530 ||||||| || || || | || || || || ||| ||||| ||||| |||||| Sbjct 187 CGCGGGCGGCAAGCGCGCGCTCGTATGGGTTGAGTGGGGGGACCCCATGGCATGGGGGTG 246 Query 6531 GGTGAGGGCAGAGGCGTACATGCCGC-AGATGTCGTAAACGTAGA-GGGGCTCCTCGAGA 6588 |||||| || |||||||||||||||| | |||||||||||||||| ||||||| ||| Sbjct 247 GGTGAGCGCGGAGGCGTACATGCCGCAAAATGTCGTAAACGTAGAGGGGGCTCTCTGAGT 306 Query 6589 ACTCCGATGTAGGTGGGGTAGCAGCGCCCTCCGCGAATACTGGCGCGCACGTAATCGTAC 6648 | ||| | || || |||||||| | || ||||| || ||||| |||||||||||||| Sbjct 307 ATTCCAAGATATGTAGGGTAGCATCTTCCACCGCGGATGCTGGCNCGCACGTAATCGTAT 366 Query 6649 ATCTCGTG-CGAGGGG-GCC-AGCAGGTT 6674 | ||||| ||||||| ||| || ||||| Sbjct 367 AGTTCGTGCCGAGGGGAGCCGAGGAGGTT 395 >seq169466 Length=306 Score = 223 bits (246), Expect = 8e-54 Identities = 224/289 (78%), Gaps = 2/289 (1%) Strand=Plus/Minus Query 14246 GAACGGGGTGCTGGAGAGCGATA-TCGGGGTGAAGTTCGACACGCGCAACTTCAGGCTGG 14304 ||||||||| ||||| ||||| ||||||| ||||| ||||| ||||||||||| |||| Sbjct 295 GAACGGGGTTCTGGAAAGCGACNGTCGGGGTAAAGTTTGACACCCGCAACTTCAGACTGG 236 Query 14305 GCTGGGACCCCGTTACCAAGCTGGTGATGCCGG-GCGTGTACACCAACGAGGCCTTCCAC 14363 | | ||||| || || || || ||||| | || || || ||||| |||||||| Sbjct 235 GGTTTGACCCAGTCACTGGTCTTGTCATGCCCTAGAGTATATACAAACGAAGCCTTCCAT 176 Query 14364 CCGGACGTGGTGCTGCTGCCGGGCTGCGGGGTGGACTTTACGCAGAGCCGTCTGAGCAAC 14423 || ||| | | ||||||||| |||||||||||| || || ||||| ||||||||| Sbjct 175 CCAGACATCATTTTGCTGCCGGATCCCGGGGTGGACTTCACCCACAGCCGCCTGAGCAAC 116 Query 14424 CTGCTGGGCATTCGCAAGCGCCAGCCTTTCCAGGAGGGCTTCCGCATCATGTACGAGGAC 14483 || ||||||| |||||||| || || |||||||||||||| | |||| ||||| ||| Sbjct 115 TTGTTGGGCATCCGCAAGCGGCAACCCTTCCAGGAGGGCTTTAGGATCACCTACGATGAC 56 Query 14484 CTGGAGGGCGGGAACATTCCGGCCCTGCTGGACGTAAAGGCCTACGAGG 14532 |||||||| || |||||||| || ||| |||| || | |||||| ||| Sbjct 55 CTGGAGGGTGGTAACATTCCCGCACTGTTGGATGTGGACGCCTACCAGG 7 >seq169021 Length=202 Score = 80.6 bits (88), Expect = 6e-11 Identities = 62/74 (84%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 5944 TCGGCGCTGAGGGTGTCAGTTTCTACAAACGAGGAGGATTTGATGTTAACCTGCCCGGAG 6003 || ||||| || |||||||||| | |||||||||||||||||| || ||||| || | | Sbjct 119 TCTGCGCTAAGATTGTCAGTTTCCAAAAACGAGGAGGATTTGATATTCACCTGGCCCGCG 178 Query 6004 GCGATGCCTTTGAG 6017 | |||||||||||| Sbjct 179 GTGATGCCTTTGAG 192 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 113658064021600