Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Serinus_20canaria_20[refseq_20GCF_5F000534875.1_202014-01-15] 304,400 sequences; 1,152,100,110 total letters Query= NC_028379.1 Length=205896 Score E Sequences producing significant alignments: (Bits) Value seq13 264 1e-65 >seq13 Length=17727969 Score = 264 bits (292), Expect = 1e-65 Identities = 672/1004 (67%), Gaps = 24/1004 (2%) Strand=Plus/Minus Query 13600 CGCCGGGAGACTACGTGAACATGACGGCCGACTGCGTGGCCTTCGTGAAAGACAGGGGG- 13658 |||| || || || ||||||| ||| |||||| || ||| | | ||| || | Sbjct 2540503 CGCCCGGCGAGTATCTGAACATTACGAGGGACTGCAGAGCATTCAAGGA-GACTCGGCGC 2540445 Query 13659 TATCTCGTGAGGCCCCTGAGCCTGGAAGAGGTCGAGTTTCCCATCGCCTACTCGATCGTG 13718 || ||| | || || |||| ||| |||| ||||| |||||||||||||| || | Sbjct 2540444 TACATCGAGTTCCCGCTCAGCCAGGAGGAGGAGGAGTTCCCCATCGCCTACTCCATGATC 2540385 Query 13719 ATCCACCACAAGATCGAGATGTTCGAGCGCCTCCTGAGGGCCATCTACGCCCCGCAGAAC 13778 ||||||||||| || || ||||| ||||| |||||| || || |||||||||| |||||| Sbjct 2540384 ATCCACCACAAAATTGACATGTTTGAGCGGCTCCTGCGGTCCGTCTACGCCCCCCAGAAC 2540325 Query 13779 CTCTACTGCGTCCACGTGGACTCCAAGTCCGGCGACGAGTTCATCCGGGGCGTCTCGGCC 13838 | ||||||||||| || ||| ||| ||| | | ||| || ||| |||| Sbjct 2540324 GTTTACTGCGTCCATGTAGACAGCAAATCCCCGGCAGCCTTCCAGGAGGCCGTGAGGGCC 2540265 Query 13839 ATCGCCAGGTGCTTCCCTAACGTGGCCCTGGCCCACCGGCTGCACGACGTGGTGTACGGC 13898 || || |||||||| || || | ||||| ||| ||| | |||||| || | | Sbjct 2540264 ATTGCTGCCTGCTTCCCCAATGTCTTCGTGGCCAGCCGCCTGGAAAGCGTGGTCTATGCC 2540205 Query 13899 TCCTGGAGTCGCGTGCAGGCCGACCTCAGCTGCATGTCGGACCTGGACGCCTCCCCCGTC 13958 |||||| | |||||||||||||||| ||||||| |||||| |||||| Sbjct 2540204 TCCTGGTCCAGGGTGCAGGCCGACCTCAACTGCATGCAGGACCTCCTGCAGAGCCCCGTG 2540145 Query 13959 AAGTGGAGGTACCTGCTCAACCTGTGCGGGATGGACTTCCCGCTCAAGACCAACCTGGAG 14018 ||| | ||||| ||||| ||||| | |||||||| ||||||||||| ||| Sbjct 2540144 CCATGGCGCTACCTCATCAACACCTGCGGCACCGACTTCCCCATCAAGACCAACGCCGAG 2540085 Query 14019 ATCGTGCGGGCGCTGAAGGCCCTGGGCGGCAAGAACGCCCTGGAGAGCGAG-GGCATGCC 14077 || || ||||||||| || || ||| ||||| || ||||| |||| ||| | Sbjct 2540084 ATGGTCCGGGCGCTGCAGCTGTTGCAGGGCCAGAACACCATGGAGTCCGAGAGGC--CCT 2540027 Query 14078 CAACC-ACAAGCTGCACCGC-ATCAGGAAGAGGCACGTGGTGGCCAGCGGCGGCGTGGTG 14135 | || ||||| ||| ||| ||| | | |||| |||| | || | | | Sbjct 2540026 CGGCCGCCAAGCAGCAGCGCTGGCAGTATCA-CCACGAGGTG----GGGGAGACCATCT- 2539973 Query 14136 GTCAACACCGGCAGGAACAAGGCCCCGCCGCCGCTCAGGATCCCCATCTTTGCGGGAAAC 14195 || ||| | ||| || || ||||| | ||| |||||| || |||| | | Sbjct 2539972 CTC-GCACTTCCCAGAAGAAACTGCCCCCGCCCCACAGCTACCCCATGTTCACGGGCAGC 2539914 Query 14196 GCTTACTTTGCGGTCACCCGGGAGTTCGTGGACTTCGTCCTCAAGGACGAGCCGGTGGCC 14255 || ||| || ||||| ||||| |||||| | | || || || || || || Sbjct 2539913 GCGTACAACGCCGTCACACGGGACTTCGTGCGGTACATCTTCGAGAAC---CCCACAGCA 2539857 Query 14256 C---TGCTCATGCACTGGTTCGAGGACACGTACAGCCCCGACGAGCACCTGTGGGCCACC 14312 | | || | | |||| | |||||| ||||| || |||||| || | ||||||||| Sbjct 2539856 CAAAAGTTCCTCGAGTGGTCCAAGGACAGCTACAGTCCTGACGAGTACGTCTGGGCCACC 2539797 Query 14313 GTGCAGAGAATGTACGGGACGCCCGGGGGGATCCCCGTTCA-CGTCAAGTACGACACCTC 14371 || | | ||| |||| |||||||| | || ||| || |||| | | ||| Sbjct 2539796 CTGAACCGCATG-CCGGGCGTGCCGGGGGGCACTCCCCTCAGCGATAAGTTCCAGCTCTC 2539738 Query 14372 GGACATGTGGGCCAAGGTCAGGTTCGTCAAGTGGCACTACTACGAGGGGGATATCAAGAA 14431 ||||||| ||| | | | ||||||||| | ||| |||||||| || | || Sbjct 2539737 GGACATGACCGCCCTTCCCCGCCTGGTCAAGTGGGAGTACCTGGAGGGGGACATGAGCAA 2539678 Query 14432 AGGGGCCCTGTACCCGCCTTGCGACGGCATCCACGTCCACGCCATCTGCATCTTCGGGTC 14491 || || | |||||||| ||| |||| |||| | | |||||||||||| |||| Sbjct 2539677 GGGCGCGCCCTACCCGCCCTGCACCGGCCGCCACCAGCGCTCCATCTGCATCTACGGGGT 2539618 Query 14492 CGGCGACGTGAAGTGGCTGAAG-AGCGTCCCGCACCTGTTCGCCAACAAGTTCGACGACG 14550 ||||||||| ||| || | ||| | | || || | ||||||||||||||| || Sbjct 2539617 GGGCGACGTGCCCTGGATGCTGCAGCAACAC-CATCTCCTGGCCAACAAGTTCGACCCCG 2539559 Query 14551 AGACGGACGAGTTCGCCGTGCGCTGTCTGGACGAGGACGTGCGC 14594 || |||||| ||||| | |||||||| ||| || ||||| Sbjct 2539558 AGGTGGACGATGCGGCCGTCCAGTGTCTGGAGGAGTACCTGCGC 2539515 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 656232697344000