Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Serinus_20canaria_20[refseq_20GCF_5F000534875.1_202014-01-15] 304,400 sequences; 1,152,100,110 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq1 123 2e-23 >seq1 Length=88717973 Score = 123 bits (136), Expect = 2e-23 Identities = 121/156 (78%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 6616 GACATGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAA 6675 |||||| || ||||||||||||||||| | || || ||||| || || ||||| |||| Sbjct 42818306 GACATGGGCAATCATGTACGTGAGCAGTGAATAGCTGGCAATATTAAAAGGCACTCCTAG 42818365 Query 6676 CCCCATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAA 6735 ||||||||||| || | |||||||| ||||| |||| || ||||| || ||||| Sbjct 42818366 TCCCATGTCTCCAGACCTCTGATAGAGTTGGCAAGACAATTCACCATTTAGAACATAGAA 42818425 Query 6736 TTGGCAGAGGGTGTGGCACGGGGGGAGCGCCATCAG 6771 ||||| |||| |||||||| || | |||||||| Sbjct 42818426 CTGGCAAAGGGCATGGCACGGAGGCAAAGCCATCAG 42818461 Score = 123 bits (136), Expect = 2e-23 Identities = 121/156 (78%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 34574 CTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAATGGGGAGCTG 34633 |||||||| | || |||||||| |||| ||||| ||||| || ||||| || || Sbjct 42818461 CTGATGGCTTTGCCTCCGTGCCATGCCCTTTGCCAGTTCTATGTTCTAAATGGTGAATTG 42818402 Query 34634 TCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTCAACATTGCT 34693 || ||||| |||||||| | || ||||||||||| |||| ||||| || || ||||| Sbjct 42818401 TCTTGCCAACTCTATCAGAGGTCTGGAGACATGGGACTAGGAGTGCCTTTTAATATTGCC 42818342 Query 34694 AGTTACGCTCTGCTCACGTACATGATCGCTCATGTC 34729 || || | ||||||||||||||||| || |||||| Sbjct 42818341 AGCTATTCACTGCTCACGTACATGATTGCCCATGTC 42818306 Score = 91.5 bits (100), Expect = 1e-13 Identities = 107/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 6899 TACTCCGCCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCC 6958 || || || ||||| || ||||||||||| || || || || ||||| || |||||||| Sbjct 42821915 TATTCTGCTCCAAAATGCCTCCACTGGAAACCATACACTGGTCCCAAATCACCCTCCTCT 42821974 Query 6959 CGAGATGGGAACCCCCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTC 7018 | | ||| ||| |||| ||||| || || || ||||| | ||| ||||| |||||| Sbjct 42821975 CTGGTGCTGAAACCCTGCTTATCCAGGAACTCACGCGACCCATTAGCATCCCAAATCTTC 42822034 Query 7019 ACCCCCCGGGACGAGAGCTCCTTGG 7043 || || | |||||||| |||| Sbjct 42822035 ACACCTTTAGCAGAGAGCTCTTTGG 42822059 Score = 91.5 bits (100), Expect = 1e-13 Identities = 107/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 34302 CCAAGGAGCTCTCGTCCCGGGGGGTGAAGATCTGGGACGCTCACGGGTCTCGAGACTTTC 34361 |||| |||||||| | || |||||||| ||||| ||| | ||||| || || || | Sbjct 42822059 CCAAAGAGCTCTCTGCTAAAGGTGTGAAGATTTGGGATGCTAATGGGTCGCGTGAGTTCC 42822000 Query 34362 TGGACAAGCGGGGGTTCCCATCTCGGGAGGAGGGCGACTTGGGCCCGGTCTACGGGTTCC 34421 |||| |||| ||| ||| | | |||||||| || ||||| || || || || |||| Sbjct 42821999 TGGATAAGCAGGGTTTCAGCACCAGAGAGGAGGGTGATTTGGGACCAGTGTATGGTTTCC 42821940 Query 34422 AGTGGAGACACTTTGGGGCGGAGTA 34446 ||||||| || ||||| || || || Sbjct 42821939 AGTGGAGGCATTTTGGAGCAGAATA 42821915 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 446556761568000