Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Serinus_20canaria_20[refseq_20GCF_5F000534875.1_202014-01-15] 304,400 sequences; 1,152,100,110 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq204287 194 4e-44 seq29 181 2e-40 seq19 176 1e-38 seq23300 158 3e-33 seq110 95.1 3e-14 seq25213 89.7 1e-12 >seq204287 Length=600 Score = 194 bits (214), Expect = 4e-44 Identities = 170/212 (80%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||||||||| ||||| |||||||| |||||||| || || | ||||| | |||||| Sbjct 308 AGGACAAGGTGCAGAGTTGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCT 367 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||||||||| |||||||| || | || ||||| ||||| | |||||||||||| Sbjct 368 TCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGGTCGGGAGGGATACCTTCCTTGTCC 427 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| ||||| || |||||||||||| | |||||||| |||||||| ||| Sbjct 428 TGGATCTTGGCCTTCACATTCTCGATGGTGTCACTGGGCTCAACCTCCAGAGTGATGGTC 487 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || || || ||||| || | |||||| Sbjct 488 TTGCCAGTCAGGGTTTTTACGAAGATCTGCAT 519 Score = 167 bits (184), Expect = 5e-36 Identities = 164/212 (77%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || ||||| || ||||| || || |||||||| ||||| | ||||| | ||||| Sbjct 80 AGCACCAGGTGCAGGGTGGATTCCTTCTGGATGTTGTAATCTGACAGGGTACGACCATCC 139 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||||||||| |||||||| || | || ||||| ||||| | |||||||||||| Sbjct 140 TCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGGTCGGGAGGGATACCTTCCTTGTCC 199 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| ||||| || |||||||||||| | || || || || ||||| ||| Sbjct 200 TGGATCTTGGCCTTCACATTCTCGATGGTGTCACTGGGCTCGACTTCCAGGGTGATAGTC 259 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || || ||||| ||||| | |||||| Sbjct 260 TTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 291 >seq29 Length=9066916 Score = 181 bits (200), Expect = 2e-40 Identities = 169/215 (79%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||||||||| ||||| |||||||| |||||||| || || | || || | |||||| Sbjct 5719837 AGGACAAGGTGCAGAGTTGACTCTTTCTGGATGTTGTAGTCAGAGAGAGTACGACCATCT 5719778 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||||||||| |||||||| | | || || || ||||||| || ||||||||| Sbjct 5719777 TCCAGCTGCTTGCCAGCGAAGATCAACCTCTGCTGATCTGGAGGAATGCCCTCCTTGTCC 5719718 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| ||||| || |||||||||||| | || ||||| || ||||| ||| Sbjct 5719717 TGGATCTTGGCCTTCACATTCTCGATGGTGTCACTGGGCTCCACCTCAAGGGTGATAGTC 5719658 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 ||||| || || ||||| ||||| | |||||| || Sbjct 5719657 TTTCCAGTCAGGGTCTTCACAAAGATCTGCATGTT 5719623 Score = 167 bits (184), Expect = 5e-36 Identities = 164/212 (77%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || ||||| || ||||| || || |||||||| ||||| | ||||| | ||||| Sbjct 5720065 AGCACCAGGTGCAGGGTGGATTCCTTCTGGATGTTGTAATCTGACAGGGTGCGCCCATCC 5720006 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||||||||| || ||||| || | || ||||| || |||| || ||||||||| Sbjct 5720005 TCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATGCCCTCCTTGTCC 5719946 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| ||||| || |||||||||||| | |||||||| || ||||| ||| Sbjct 5719945 TGGATCTTGGCCTTCACATTCTCGATGGTGTCACTGGGCTCAACCTCCAGGGTGATGGTC 5719886 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || || ||||| ||||| | |||||| Sbjct 5719885 TTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 5719854 >seq19 Length=13664266 Score = 176 bits (194), Expect = 1e-38 Identities = 166/212 (78%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||||||||| ||||| ||||| || ||||| || || || | ||||| | |||||| Sbjct 12085113 AGGACAAGGTGCAGAGTTGACTCCTTCTGGATATTGTAGTCAGAGAGGGTGCGGCCATCT 12085172 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||||||||| || ||||| || | || ||||||||||| | ||||||||||| Sbjct 12085173 TCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGGATGCCTTCCTTGTCT 12085232 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| ||| || || || ||||||||| | ||| || || |||||||| ||| Sbjct 12085233 TGGATCTTGGCTTTGACATTCTCAATGGTGTCACTGGGTTCGACTTCCAGAGTGATGGTC 12085292 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || || ||||| ||||| | |||||| Sbjct 12085293 TTGCCAGTCAGGGTCTTGACAAAGATCTGCAT 12085324 Score = 149 bits (164), Expect = 1e-30 Identities = 162/215 (75%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || || || || ||||| || || |||||||| || || | ||||| | ||||| Sbjct 12085341 AGCACGAGATGCAGTGTGGATTCCTTCTGGATGTTGTAGTCAGAGAGGGTACGGCCATCC 12085400 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||||||||| || ||||| || | || ||||||||||| | ||||||||||| Sbjct 12085401 TCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGGATGCCTTCCTTGTCT 12085460 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || || ||||| ||||||||| | || ||||| || ||||| ||| Sbjct 12085461 TGGATCTTGGCCTTGACATTTTCAATGGTGTCACTGGGCTCGACCTCAAGGGTGATGGTC 12085520 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 || || || | ||||| || || | ||||||||| Sbjct 12085521 TTGCCAGTCAAGGTCTTGACGAAGATCTGCATTTT 12085555 >seq23300 Length=271 Score = 158 bits (174), Expect = 3e-33 Identities = 162/212 (76%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || ||||| || ||||| || || |||||||| ||||| | ||||| | |||||| Sbjct 218 AGCACCAGGTGCAGGGTGGATTCCTTCTGGATGTTGTAATCTGACAGGGTACGACCATCT 159 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 ||||||||||| ||||| ||||| || | || ||||| || |||| || ||||||||| Sbjct 158 TCCAGCTGCTTCCCTGCAAAGATCAGCCTCTGCTGGTCGGGGGGAATGCCCTCCTTGTCC 99 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| ||||| || || ||||||||| | || || || || ||||| ||| Sbjct 98 TGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCGACTTCCAGGGTGATGGTC 39 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || || ||||| ||||| | |||||| Sbjct 38 TTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 7 >seq110 Length=666948 Score = 95.1 bits (104), Expect = 3e-14 Identities = 85/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 211011 CCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCG 211070 |||||||| ||||||||||| ||||||||| |||||||||||| | || |||||| Sbjct 229043 CCTTCCTTATCCTGGATCTTGGCTTTCACGTTCTCGATGGTGTCATTGGGCTCCACCTCG 229102 Query 211071 AGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 || ||||| || || ||||| || ||||| || || | |||||| || Sbjct 229103 AGGGTGATGGTTTTGCCCGTCAGGGTCTTCACGAAGATCTGCATCTT 229149 >seq25213 Length=167 Score = 89.7 bits (98), Expect = 1e-12 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || ||||| || ||||| || || |||||||| || || | ||||| | |||||| Sbjct 57 AGCACCAGGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCT 116 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGG 211006 |||||||||||||| |||||||| || | || ||||| ||||| Sbjct 117 TCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGGTCGGGAGG 160 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1154631162306000