Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Serinus_20canaria_20[refseq_20GCF_5F000534875.1_202014-01-15] 304,400 sequences; 1,152,100,110 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq204287 172 1e-37 seq23300 138 3e-27 seq29 138 3e-27 seq19 134 3e-26 seq25213 95.1 3e-14 seq108822 91.5 4e-13 >seq204287 Length=600 Score = 172 bits (190), Expect = 1e-37 Identities = 166/213 (78%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560 |||||||||||| ||||| || ||||| |||| ||||| || | || || | |||||| Sbjct 307 CAGGACAAGGTGCAGAGTTGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATC 366 Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620 ||| |||||||| ||||||||||| || | || |||||||| || |||||||||||||| Sbjct 367 TTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGGTCGGGAGGGATACCTTCCTTGTC 426 Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 |||||||| ||||||| ||||||||||| || || || || | ||||| || Sbjct 427 CTGGATCTTGGCCTTCACATTCTCGATGGTGTCACTGGGCTCAACCTCCAGAGTGATGGT 486 Query 225681 CTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 |||||| |||| ||||||| ||| | ||||| Sbjct 487 CTTGCCAGTCAGGGTTTTTACGAAGATCTGCAT 519 Score = 147 bits (162), Expect = 5e-30 Identities = 147/191 (77%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560 ||| || ||||| || |||||||| || |||| |||||||| | || || | ||||| Sbjct 79 CAGCACCAGGTGCAGGGTGGATTCCTTCTGGATGTTGTAATCTGACAGGGTACGACCATC 138 Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620 || |||||||| ||||||||||| || | || |||||||| || |||||||||||||| Sbjct 139 CTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGGTCGGGAGGGATACCTTCCTTGTC 198 Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 |||||||| ||||||| ||||||||||| || || || || | ||||| || Sbjct 199 CTGGATCTTGGCCTTCACATTCTCGATGGTGTCACTGGGCTCGACTTCCAGGGTGATAGT 258 Query 225681 CTTGCCCGTCA 225691 |||||| |||| Sbjct 259 CTTGCCAGTCA 269 >seq23300 Length=271 Score = 138 bits (152), Expect = 3e-27 Identities = 145/191 (76%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560 ||| || ||||| || |||||||| || |||| |||||||| | || || | ||||| Sbjct 219 CAGCACCAGGTGCAGGGTGGATTCCTTCTGGATGTTGTAATCTGACAGGGTACGACCATC 160 Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620 ||| ||||||||||| || ||||| || | || |||||||| ||||| || |||||||| Sbjct 159 TTCCAGCTGCTTCCCTGCAAAGATCAGCCTCTGCTGGTCGGGGGGAATGCCCTCCTTGTC 100 Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 |||||||| ||||||| || |||||||| || || || || | ||||| || Sbjct 99 CTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCGACTTCCAGGGTGATGGT 40 Query 225681 CTTGCCCGTCA 225691 |||||| |||| Sbjct 39 CTTGCCAGTCA 29 >seq29 Length=9066916 Score = 138 bits (152), Expect = 3e-27 Identities = 145/191 (76%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560 |||||||||||| ||||| || ||||| |||| ||||| || | | ||| | ||||| Sbjct 5719838 CAGGACAAGGTGCAGAGTTGACTCTTTCTGGATGTTGTAGTCAGAGAGAGTACGACCATC 5719779 Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620 ||| |||||||| ||||||||||| | | || || || || ||||| || |||||||| Sbjct 5719778 TTCCAGCTGCTTGCCAGCGAAGATCAACCTCTGCTGATCTGGAGGAATGCCCTCCTTGTC 5719719 Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 |||||||| ||||||| ||||||||||| || ||||| || | ||||| || Sbjct 5719718 CTGGATCTTGGCCTTCACATTCTCGATGGTGTCACTGGGCTCCACCTCAAGGGTGATAGT 5719659 Query 225681 CTTGCCCGTCA 225691 ||| || |||| Sbjct 5719658 CTTTCCAGTCA 5719648 Score = 138 bits (152), Expect = 3e-27 Identities = 145/191 (76%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560 ||| || ||||| || |||||||| || |||| |||||||| | || || | |||||| Sbjct 5720066 CAGCACCAGGTGCAGGGTGGATTCCTTCTGGATGTTGTAATCTGACAGGGTGCGCCCATC 5720007 Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620 || |||||||| ||||| ||||| || | || ||||| || ||||| || |||||||| Sbjct 5720006 CTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATGCCCTCCTTGTC 5719947 Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 |||||||| ||||||| ||||||||||| || || || || | ||||| || Sbjct 5719946 CTGGATCTTGGCCTTCACATTCTCGATGGTGTCACTGGGCTCAACCTCCAGGGTGATGGT 5719887 Query 225681 CTTGCCCGTCA 225691 |||||| |||| Sbjct 5719886 CTTGCCAGTCA 5719876 >seq19 Length=13664266 Score = 134 bits (148), Expect = 3e-26 Identities = 149/199 (75%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 || || | |||||||||||| ||||| || || || |||| |||||| || | | || Sbjct 12085104 CGCAGGCGCAGGACAAGGTGCAGAGTTGACTCCTTCTGGATATTGTAGTCAGAGAGGGTG 12085163 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 | |||||||| |||||||| ||||| ||||| || | || ||||| || || || ||| Sbjct 12085164 CGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGGATGCCT 12085223 Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672 ||||||||||||||||| || ||| || |||||||| || ||| || || | Sbjct 12085224 TCCTTGTCTTGGATCTTGGCTTTGACATTCTCAATGGTGTCACTGGGTTCGACTTCCAGA 12085283 Query 225673 GTGATCGTCTTGCCCGTCA 225691 ||||| |||||||| |||| Sbjct 12085284 GTGATGGTCTTGCCAGTCA 12085302 Score = 134 bits (148), Expect = 3e-26 Identities = 164/224 (73%), Gaps = 0/224 (0%) Strand=Plus/Plus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 || || | ||| || || || || |||||||| || |||| ||||| || | | || Sbjct 12085332 CGCAGGCGCAGCACGAGATGCAGTGTGGATTCCTTCTGGATGTTGTAGTCAGAGAGGGTA 12085391 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 | ||||| || |||||||| ||||| ||||| || | || ||||| || || || ||| Sbjct 12085392 CGGCCATCCTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGGATGCCT 12085451 Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672 ||||||||||||||||| ||| ||| ||| |||||||| || || || || | Sbjct 12085452 TCCTTGTCTTGGATCTTGGCCTTGACATTTTCAATGGTGTCACTGGGCTCGACCTCAAGG 12085511 Query 225673 GTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 ||||| |||||||| ||||| || || | ||| | |||||||| Sbjct 12085512 GTGATGGTCTTGCCAGTCAAGGTCTTGACGAAGATCTGCATTTT 12085555 >seq25213 Length=167 Score = 95.1 bits (104), Expect = 3e-14 Identities = 88/112 (79%), Gaps = 0/112 (0%) Strand=Plus/Plus Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560 ||| || ||||| || |||||||| || |||| ||||| || | || || | |||||| Sbjct 56 CAGCACCAGGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATC 115 Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 ||| |||||||| ||||||||||| || | || |||||||| || |||||| Sbjct 116 TTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGGTCGGGAGGGATACCT 167 >seq108822 Length=674 Score = 91.5 bits (100), Expect = 4e-13 Identities = 130/181 (72%), Gaps = 4/181 (2%) Strand=Plus/Plus Query 7551 CCAACTTTACAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTAT 7610 |||| | |||||||| || | ||||| ||||| || || || || ||||| | ||||| Sbjct 334 CCAAGTCTACAACGTAATCGTCACGGCCCATGCTTTCGTAATAATCTTCTTCATAGTTAT 393 Query 7611 GCCGGTTATGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGA 7670 || | || || || ||||||||||| ||| | ||||| |||| || || || || || Sbjct 394 ACCCATCATAATTGG-GGTTTCGGAAACTGACTAGTTCCCCTAATAATCGGAGCCCCAGA 452 Query 7671 TATGGCTTTTCCAAGGCTTAACAATATAAGTTTTTGATTACTACCGCCTTCCTTATTTCT 7730 || || || ||| | | || || ||||| || ||| |||| || || || |||||| Sbjct 453 CATAGCATTCCCACGAATAAATAACATAAGCTTCTGACTACTTCCCCCATC---ATTTCT 509 Query 7731 A 7731 | Sbjct 510 A 510 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1187880179253600