Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Serinus_20canaria_20[refseq_20GCF_5F000534875.1_202014-01-15] 304,400 sequences; 1,152,100,110 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq1 129 5e-25 seq57 91.5 1e-13 >seq1 Length=88717973 Score = 129 bits (142), Expect = 5e-25 Identities = 127/164 (77%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 29714 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGC 29773 ||||| ||||| || || |||||||||||||| || || |||||||| || ||||| ||| Sbjct 42818298 AGCCCTGTGACATGGGCAATCATGTACGTGAGCAGTGAATAGCTGGCAATATTAAAAGGC 42818357 Query 29774 ACCCCGAGCCCCATGTCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGTCGCTC 29833 || || || |||||||| || |||||||| ||||| ||||| || | || || | Sbjct 42818358 ACTCCTAGTCCCATGTCTCCAGACCTCTGATAGAGTTGGCAAGACAATTCACCATTTAGA 42818417 Query 29834 ACGTAAAACTGACACATGGCATGGCACGGAGGAAGGGCCATGAG 29877 || || ||||| || | ||||||||||||||| | ||||| || Sbjct 42818418 ACATAGAACTGGCAAAGGGCATGGCACGGAGGCAAAGCCATCAG 42818461 Score = 102 bits (112), Expect = 7e-17 Identities = 123/162 (76%), Gaps = 4/162 (2%) Strand=Plus/Plus Query 30017 AAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCT-GTGCTCGAA 30075 ||||||||||||||||| || ||||| ||||||| || ||||| || || ||||| ||| Sbjct 42821927 AAATGCCTCCACTGGAAACCATACACTGGTCCCAAATCACCCTCCTCTCTGGTGCT-GAA 42821985 Query 30076 GCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTC 30135 ||| ||| |||| || || | || || || || ||||| ||||| || || || | Sbjct 42821986 ACCCTGCTTATCCAGGAACTCACGCGACCCATTAGCATCCCAAATCTTCACACCTTTAGC 42822045 Query 30136 GGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAG 30177 ||||||||||||| ||||| || || || || || ||||| Sbjct 42822046 AGAGAGCTCTTTGGCATTTGTAGAACC-CT-ACAAAACACAG 42822085 >seq57 Length=2471119 Score = 91.5 bits (100), Expect = 1e-13 Identities = 85/108 (79%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 114284 TTAAGCTCCCTGCTGAGGACTACGTTTAGCCTGTCTCTCAGAGGTCTATTCTTTTCGGGG 114343 || ||||| |||||||| || | || | ||||||| | | ||| | ||||| || ||| Sbjct 1904339 TTGAGCTCTCTGCTGAGCACAATATTAATCCTGTCTTTTAAAGGACGGTTCTTCTCAGGG 1904280 Query 114344 ATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTACCT 114391 ||||||||||| || ||| ||||||||||||| | ||||| |||||| Sbjct 1904279 ATGGAGAACCACGTTTTTTTACCCATTATCACTGCATTCTGTTTACCT 1904232 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 404656385298400