Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Serinus_20canaria_20[refseq_20GCF_5F000534875.1_202014-01-15] 304,400 sequences; 1,152,100,110 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq1 113 4e-20 seq2 111 1e-19 >seq1 Length=88717973 Score = 113 bits (124), Expect = 4e-20 Identities = 98/122 (80%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 4572 TCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTTTA 4631 || ||||||||||| ||||| || || || || ||||| ||||| | || ||||| || Sbjct 70129876 TCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAATCCAGGCATCAGGCCCCTCTTCTTC 70129935 Query 4632 AGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAACGCT 4691 |||||||||||||| ||||| || || |||||||| |||||||| || || ||||| || Sbjct 70129936 AGCCAAAATATAGCAGCAAAGGAACCCGAAAAGAAGATGCCTTCCACTGCAGCAAAGGCA 70129995 Query 4692 AC 4693 || Sbjct 70129996 AC 70129997 Score = 105 bits (116), Expect = 6e-18 Identities = 102/130 (78%), Gaps = 1/130 (1%) Strand=Plus/Plus Query 4922 AAATCTTTCT-ACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAA 4980 || ||||||| || | |||||| ||||| || || ||||||||||||||||| |||| || Sbjct 70134602 AAGTCTTTCTCACCAGGTTTTCATTTACAATTCCATCACTGGCTGCAAAAAATGCCAGAA 70134661 Query 4981 CATGAGATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAATCTTTAG 5040 ||||||| |||||||| | ||| || | || || || |||||||| || | || || | Sbjct 70134662 CATGAGAGATAAAGTATTTTTCATCTGCTTTCAGCTTGTTCCAGTGAGGAAGGTCCTTTG 70134721 Query 5041 TTAAATCAAC 5050 |||||||| Sbjct 70134722 ACAAATCAAC 70134731 >seq2 Length=67421796 Score = 111 bits (122), Expect = 1e-19 Identities = 99/124 (80%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 4572 TCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTTTA 4631 || |||||||| || ||||| |||||||| || | ||| |||||||| ||||| || || Sbjct 53986094 TCATCTCTGCTGATGAGTTCATTAGAAAAAGTCAGTCCAGGCATTAATCCTCTTTTCTTC 53986035 Query 4632 AGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAACGCT 4691 |||||||| || | ||||| || ||||||||||| || ||||| || || ||||| || Sbjct 53986034 AGCCAAAAAATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCCACAGCTGCAAAGGCC 53985975 Query 4692 ACTA 4695 |||| Sbjct 53985974 ACTA 53985971 Score = 89.7 bits (98), Expect = 4e-13 Identities = 79/99 (80%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 4817 AATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTCTATAGCAATCTG 4876 ||| || ||||| || || || || |||||||| |||||||||||||| || |||||||| Sbjct 53984443 AATGTAGGTGTCAATGAGAAGACTGTACATTTCTGAATGTATATTTTCCATGGCAATCTG 53984384 Query 4877 AAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTC 4915 || || || || || | ||||||||| | ||| ||||| Sbjct 53984383 GAAGCCATAGAAACAACGAGCTTCTGTGATTTGTACTTC 53984345 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425465299365200