Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Serinus_20canaria_20[refseq_20GCF_5F000534875.1_202014-01-15] 304,400 sequences; 1,152,100,110 total letters Query= NC_030842.1 Length=115510 Score E Sequences producing significant alignments: (Bits) Value seq1 127 2e-24 >seq1 Length=88717973 Score = 127 bits (140), Expect = 2e-24 Identities = 127/165 (77%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 27208 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 27267 ||||| ||||| || || |||||||||||||| || || |||||||| || ||||| || Sbjct 42818298 AGCCCTGTGACATGGGCAATCATGTACGTGAGCAGTGAATAGCTGGCAATATTAAAAGGC 42818357 Query 27268 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCATCGCTT 27327 || || || |||||||| || |||||||| ||||| || || || | || |||| Sbjct 42818358 ACTCCTAGTCCCATGTCTCCAGACCTCTGATAGAGTTGGCAAGACAATTCACCATTTAGA 42818417 Query 27328 ACGTAAAACTGACATATGGCGTGGCACGGAGGAAGAGCCATGAGG 27372 || || ||||| || | ||| ||||||||||| | |||||| ||| Sbjct 42818418 ACATAGAACTGGCAAAGGGCATGGCACGGAGGCAAAGCCATCAGG 42818462 Score = 114 bits (126), Expect = 1e-20 Identities = 139/184 (76%), Gaps = 4/184 (2%) Strand=Plus/Plus Query 27489 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCATTGGAACCCGTACACCGGTCCCAGGTC 27548 ||| || |||| |||||||| ||||||||||| ||||| || ||||| ||||||| || Sbjct 42821905 CATATCTTTGTATTCTGCTCCAAAATGCCTCCACTGGAAACCATACACTGGTCCCAAATC 42821964 Query 27549 TCCCTCTTCCCT-GTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGT 27607 ||||| || || ||||| ||| ||| ||| |||| || || | || || || || | Sbjct 42821965 ACCCTCCTCTCTGGTGCT-GAAACCCTGCTTATCCAGGAACTCACGCGACCCATTAGCAT 42822023 Query 27608 CCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACC 27667 |||| ||||| || || || | ||||||||||||| ||||| || || || || || | Sbjct 42822024 CCCAAATCTTCACACCTTTAGCAGAGAGCTCTTTGGCATTTGTAGAACC-CT-ACAAAAC 42822081 Query 27668 ACAG 27671 |||| Sbjct 42822082 ACAG 42822085 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 368136374476400