Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Serinus_20canaria_20[refseq_20GCF_5F000534875.1_202014-01-15] 304,400 sequences; 1,152,100,110 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq2 102 1e-16 seq77 86.0 9e-12 seq1 84.2 3e-11 >seq2 Length=67421796 Score = 102 bits (112), Expect = 1e-16 Identities = 94/119 (79%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 48165 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTG 48224 |||||||| || || | ||| |||||||| || || || ||||||| ||| | ||| || Sbjct 53986094 TCATCTCTGCTGATGAGTTCATTAGAAAAAGTCAGTCCAGGCATTAATCCTCTTTTCTTC 53986035 Query 48225 AGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATGC 48283 |||||||| |||| || ||||| ||||||||||| || ||||| || || ||||| || Sbjct 53986034 AGCCAAAAAATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCCACAGCTGCAAAGGC 53985976 Score = 96.9 bits (106), Expect = 5e-15 Identities = 91/115 (79%), Gaps = 1/115 (1%) Strand=Plus/Minus Query 47830 CTTGAGACATAACTCCCATTTTTTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTT 47889 |||| ||||| |||||||| | ||||||||||| || || ||||| || ||||| || | Sbjct 53987332 CTTG-GACATGACTCCCATCCTCTGATATTCACCTACTCGCTTCTCAAAGAAATTGGTCT 53987274 Query 47890 TGCCTTCCAATGATATATTTTCCATAAAATCAAATGGATTAACTGCATTATAAAT 47944 ||||||||| || || |||||||| || ||||| ||||| |||| || || || Sbjct 53987273 TGCCTTCCAGAGAGATGTTTTCCATGAAGTCAAAAGGATTCTCTGCTTTGTATAT 53987219 Score = 86.0 bits (94), Expect = 9e-12 Identities = 82/105 (78%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 48401 ATCTTTAACGTAAGTATCTATTAAAAGACTATACATTTCGGAGTGAATATTTTCAATTGC 48460 ||| |||| ||| || || || | |||||| |||||||| || || |||||||| || || Sbjct 53984449 ATCCTTAATGTAGGTGTCAATGAGAAGACTGTACATTTCTGAATGTATATTTTCCATGGC 53984390 Query 48461 CATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATCTGTACCTC 48505 ||||| || || || ||||| | ||||||||||| ||||| || Sbjct 53984389 AATCTGGAAGCCATAGAAACAACGAGCTTCTGTGATTTGTACTTC 53984345 >seq77 Length=1106213 Score = 86.0 bits (94), Expect = 9e-12 Identities = 97/130 (75%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 77733 ATCTCGGTACATAGATTACTACATTTGATAGTGCCCAGATTTTGTTGGTTGCTCTTTTTA 77792 ||||| || || || || || |||||||| |||||||| || || ||||||||||| | Sbjct 1101065 ATCTCAGTGCACAGGTTGCTGCATTTGATGGTGCCCAGGTTCTGCTGGTTGCTCTTCCTG 1101006 Query 77793 TTGCATGAGTCCTTATAAAGAATAAACGGAGTCCCGGTTTCAATCTGTGATTCGATAATA 77852 ||||| |||||||| || || || | || || || || || |||| || ||||| || Sbjct 1101005 TTGCAAGAGTCCTTGTAGAGCATGTAGGGGGTGCCAGTCTCGGTCTGGGACTCGATGATG 1100946 Query 77853 GATTTCCAGA 77862 | | ||||| Sbjct 1100945 GCGTACCAGA 1100936 >seq1 Length=88717973 Score = 84.2 bits (92), Expect = 3e-11 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 48165 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTG 48224 |||||||| ||||| | ||| || || || || | || ||||| || || | || || Sbjct 70129876 TCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAATCCAGGCATCAGGCCCCTCTTCTTC 70129935 Query 48225 AGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATGC 48283 ||||||||||| || || || || || |||||||| |||||||| || || ||||| || Sbjct 70129936 AGCCAAAATATAGCAGCAAAGGAACCCGAAAAGAAGATGCCTTCCACTGCAGCAAAGGC 70129994 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 692025585216000