Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Serinus_20canaria_20[refseq_20GCF_5F000534875.1_202014-01-15] 304,400 sequences; 1,152,100,110 total letters Query= NC_032105.1 Length=33562 Score E Sequences producing significant alignments: (Bits) Value seq169466 190 4e-44 seq171425 183 6e-42 seq170248 87.8 4e-13 >seq169466 Length=306 Score = 190 bits (210), Expect = 4e-44 Identities = 199/260 (77%), Gaps = 1/260 (0%) Strand=Plus/Minus Query 13992 TCGGGGTCAAGTTCGATACCAGAAACTTTAAACTGGGGTGGGACCCCGTCACCGGGCTGG 14051 ||||||| ||||| || ||| | ||||| | |||||||| ||||| ||||| || || | Sbjct 271 TCGGGGTAAAGTTTGACACCCGCAACTTCAGACTGGGGTTTGACCCAGTCACTGGTCTTG 212 Query 14052 TAATGCCCGGG-GTCTACACGAACGAGGCTTTCCATCCCGACATCGTGCTTCTGCCCGGC 14110 | |||||| | || || || ||||| || |||||||| |||||| | | ||||| | Sbjct 211 TCATGCCCTAGAGTATATACAAACGAAGCCTTCCATCCAGACATCATTTTGCTGCCGGAT 152 Query 14111 TGCGGCGTGGACTTTACCCACAGCCGGCTTAGCAACCTGCTGGGCATCCGCAAACGCATG 14170 ||| |||||||| ||||||||||| || |||||| || ||||||||||||| || Sbjct 151 CCCGGGGTGGACTTCACCCACAGCCGCCTGAGCAACTTGTTGGGCATCCGCAAGCGGCAA 92 Query 14171 CCCTTTCAGGAGGGATTCCAGATCATGTACGAGGACCTGATAGGGGGAGACATTCCCGCG 14230 ||||| |||||||| || ||||| ||||| |||||| || || |||||||||| Sbjct 91 CCCTTCCAGGAGGGCTTTAGGATCACCTACGATGACCTGGAGGGTGGTAACATTCCCGCA 32 Query 14231 CTGTTAGACGTGGACGCTTA 14250 ||||| || |||||||| || Sbjct 31 CTGTTGGATGTGGACGCCTA 12 >seq171425 Length=537 Score = 183 bits (202), Expect = 6e-42 Identities = 265/364 (73%), Gaps = 9/364 (2%) Strand=Plus/Plus Query 6271 GCTCGTTCGTCCAGCACAGGCGTCCTCCTTTGCGGGAGCAAAAAGGGGGCAGCACGTCCA 6330 ||||||| |||||||| ||||| || || ||||| ||||| || || || || ||| | Sbjct 20 GCTCGTTGGTCCAGCAGAGGCGGCCGCCCTTGCGCGAGCAGAATGGCGGTAGGG-GTCTA 78 Query 6331 ACATGGACTCGTCAGGGGGGTCGGCGTCGATGGTAAAAATTCCTGGCAGCAGAGAAGGAT 6390 | | |||||| |||||||| ||||| | |||||| | || |||||||| | | Sbjct 79 GCTGCGTCTCGTCCGGGGGGTCTGCGTCCACGGTAAAGACCCCGGGCAGCAGGCGCGCGT 138 Query 6391 GAAAGTAGTCGATGT--CCTCCTGCCGCGAC-AGGGCCTTCTCCCATTCGTGCACGGCCA 6447 |||||||| || | | |||| | | | || |||| || |||| || | |||| | Sbjct 139 CGAAGTAGTCTATCTTGCATCCTTGCAAGTCTAGCGCCTGCTGCCATGCGCGGGCGGCAA 198 Query 6448 GGGCCCGCTCGTAGGGACTCAG-GGGCGCCCCCCACGGCATGGGG-TGTGTCAGCGCCGA 6505 | || |||||||| || | || ||| | ||||| ||||||||| || || ||||| || Sbjct 199 GCGCGCGCTCGTATGGGTTGAGTGGGGGGACCCCATGGCATGGGGGTGGGTGAGCGCGGA 258 Query 6506 AGCATACATCCCGCAGA-TGTCATACACGTACAGGGG-CTCGCGGAGGACGCCCATGTAG 6563 || ||||| ||||| | |||| || ||||| ||||| ||| | ||| | || | || Sbjct 259 GGCGTACATGCCGCAAAATGTCGTAAACGTAGAGGGGGCTCTCTGAGTATTCCAAGATAT 318 Query 6564 GTGGGGTAACAGCGCCCCCCTCTGATGCTGGCCCGCACGTAATCGTACAGTTCGTG-GGA 6622 || ||||| || | || || | ||||||||| |||||||||||||| |||||||| || Sbjct 319 GTAGGGTAGCATCTTCCACCGCGGATGCTGGCNCGCACGTAATCGTATAGTTCGTGCCGA 378 Query 6623 GGGG 6626 |||| Sbjct 379 GGGG 382 >seq170248 Length=157 Score = 87.8 bits (96), Expect = 4e-13 Identities = 113/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 10678 GAGGAGGCCGAGGAGATGCGGGACTTGCGGTTCAGGGCGGGAAGGGAGTTGCGACACGGT 10737 |||||| |||||||||||||||| |||| || || | ||| |||| || || Sbjct 156 GAGGAGCCCGAGGAGATGCGGGATCGAAAGTTCCACGCAGGGCGCGAGCTGCGGCATGGC 97 Query 10738 CTTGACCGACAGCGGTTGTTGAGGGAGGAAGATTTTGAGGTGGACGAAAAGACGGGCGTC 10797 || | || |||||||| || | ||||| || |||||| |||| || || | Sbjct 96 CTGAATCGCGAGCGGTTGCTGCGCGAGGAGGACTTTGAGCCCGACGCGCGAACCGGGATT 37 Query 10798 AGTCCCGCGCGCGCACACGTGGCTGCGGCCAACCTG 10833 ||||||||||||||||||||||| || ||| ||||| Sbjct 36 AGTCCCGCGCGCGCACACGTGGCGGCCGCCGACCTG 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 106889021187200