Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Serinus_20canaria_20[refseq_20GCF_5F000534875.1_202014-01-15] 304,400 sequences; 1,152,100,110 total letters Query= NC_033176.1 Length=224064 Score E Sequences producing significant alignments: (Bits) Value seq10 188 1e-42 >seq10 Length=27271039 Score = 188 bits (208), Expect = 1e-42 Identities = 220/297 (74%), Gaps = 0/297 (0%) Strand=Plus/Minus Query 8289 GGAACGCGGCCAACGGACACCCCTTGACGTTGCTACAGACTAGAGACTGAATAGTTGCGC 8348 |||| || | || ||||| || || |||||| | |||| || ||| | | || Sbjct 2972491 GGAAGGCAGTGAAGGGACAGCCTTTCACGTTGTTGCAGATGAGCTTCTGCAGGGAGGCCG 2972432 Query 8349 TCTTGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGG 8408 | |||| ||| |||| ||||| | || || ||||||||||||||||||||| | |||| Sbjct 2972431 TGTTGATGATGTCGAAGCCCACCTTGCCCCCAAAGGTGCTGGGCTTCCAGTACTCGGGGG 2972372 Query 8409 AGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGC 8468 |||||||| |||| |||| || || || ||||||||||| || |||| ||| | ||| Sbjct 2972371 AGCAGATGGCGTTGCCCATCAGCCCCTTCAGGGAGAACGGTGCTCCCATCTCCACCATGG 2972312 Query 8469 TCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCA 8528 |||| || |||||||| ||| |||||||| ||||||| | || | ||||||||||| Sbjct 2972311 TCTCGCCAAAGATGGCCCCGGGCCGGGGCTTCTCCACCAGCAGGCCTGGGTACAGCTCCA 2972252 Query 8529 CAGCCTCGACGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTCCTG 8585 || |||| ||| ||||| || || || || || || ||||| |||||||||| Sbjct 2972251 TGGCATCGATGTCCCCGTACAGCTCCTCCAGCTCCGCTGCCATCTCTTTTTCTCCTG 2972195 Score = 129 bits (142), Expect = 8e-25 Identities = 181/254 (71%), Gaps = 0/254 (0%) Strand=Plus/Minus Query 9232 TCCCCGATAATGATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGT 9291 || ||||| | ||||| || | ||||||||| || |||||||| ||| || || || Sbjct 2970566 TCACCGATCAGAATGAGCCGGGCGGTCTGGAAGAGCTGCTCGTCGTCCCACTCGGGGTGC 2970507 Query 9292 TCTTGTTTCAGAACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATC 9351 | || || || || ||||| || | |||||| || | |||||||| |||||||||||| Sbjct 2970506 TGGTGCTTGAGCACGTCGCAGACGCGGTTGTGCTCGCGCAGCCAGATCGTGGCGTACATC 2970447 Query 9352 ATGAGCCCAGGTACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGC 9411 |||||||| || ||||| || || |||| || || || | | |||| || |||||| Sbjct 2970446 ATGAGCCCGGGCACCAGCCCGAACACCTCCTGCCCCACGGAGAAGCGCAGGTGCTCGGGC 2970387 Query 9412 ACTTCGGGAGGATAGATCATGTGCACCTGGACGTCTTTGACCGAGGGGGGATACATTTCA 9471 || | ||| || || | ||| | |||| ||| |||| || || ||||| || Sbjct 2970386 ACGTGGGGTGGGTACAGCATCTCTGCCTGCGTGTCCCGCACCGTCGGAGGGTACATCTCT 2970327 Query 9472 CCGTCAATCATCTG 9485 || | |||||||| Sbjct 2970326 CCATTGATCATCTG 2970313 Score = 84.2 bits (92), Expect = 3e-11 Identities = 120/168 (71%), Gaps = 2/168 (1%) Strand=Plus/Minus Query 9908 TCACCTTTGACCCCAACAGGAGTTGGACAATCGTGAGGAACCGGAGGTAGAATCCTTGCG 9967 |||||||| || || | || ||||| || || | || || || || | |||| | Sbjct 2968704 TCACCTTTAACACCCATTGGTGTTGGGCAGTCAAGTCCTACTGGTGGAAGGCTTCTTGTG 2968645 Query 9968 TAATAGGAGAGATTGGAGAAAGCTTCCCAGCTTGGGTATTCGTAGTCCGCGTTGTATATG 10027 || ||||| |||||||| ||||||||||| || ||| | |||||| ||||| | Sbjct 2968644 TAGTAGGAAAGATTGGAATAAGCTTCCCAGGTTTTGTAATTGTAGTCACTATTGTAAGTT 2968585 Query 10028 GGAGGGCTGTCAATCAAATCGGATCTACCTG--AGCCAGCAAAAAATA 10073 || |||||||||||||| | ||||| ||| || || |||||||| Sbjct 2968584 GGTGGGCTGTCAATCAAGTGTGATCTTGCTGAAAGGCAAAAAAAAATA 2968537 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 714149083776000