Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Serinus_20canaria_20[refseq_20GCF_5F000534875.1_202014-01-15] 304,400 sequences; 1,152,100,110 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq204287 152 1e-31 seq29 149 2e-30 seq19 127 5e-24 seq110 91.5 4e-13 >seq204287 Length=600 Score = 152 bits (168), Expect = 1e-31 Identities = 167/220 (76%), Gaps = 4/220 (2%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || ||||| ||||| || || || || || ||||| || ||||| || || ||| Sbjct 516 CAGATCTTCGTAAAAACCCTGACTGGCAAGACCATCACTCTGGAGGTTGA--GCCCAGTG 459 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||||||||| || || ||||| |||||||| ||||| |||||||| ||||||| Sbjct 458 ACACCATCGAGAATGTGAAGGCCAAGATCCAGGACAAGGAAGGTATCCCTCCCGACCAGC 399 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | || |||||||| || || ||||| |||||||| | || || | || || ||| Sbjct 398 AGAGGCTGATCTTCGCTGGCAAGCAGCTGGAAGATGGGCGCACCCTGTCTGACTACAACA 339 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAG 178141 |||| ||||| ||||| ||||| ||||| || | ||||| Sbjct 338 TCCAGAAAGAGTCAACTCTGCACCTTGTCCTGCGCCTCAG 299 Score = 136 bits (150), Expect = 9e-27 Identities = 164/221 (74%), Gaps = 4/221 (2%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || || ||||| || || || || || || |||||||| || || || || ||| Sbjct 288 CAGATCTTTGTGAAGACCCTGACTGGCAAGACTATCACCCTGGAAGTCGA--GCCCAGTG 231 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||||||||| || || ||||| |||||||| ||||| |||||||| ||||||| Sbjct 230 ACACCATCGAGAATGTGAAGGCCAAGATCCAGGACAAGGAAGGTATCCCTCCCGACCAGC 171 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | || |||||||| || || ||||| || ||||| | || || | ||||| ||| Sbjct 170 AGAGGCTGATCTTCGCTGGCAAGCAGCTGGAGGATGGTCGTACCCTGTCAGATTACAACA 111 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 |||| || ||||| || ||||| || || || | || ||| Sbjct 110 TCCAGAAGGAATCCACCCTGCACCTGGTGCTGCGTCTGAGA 70 >seq29 Length=9066916 Score = 149 bits (164), Expect = 2e-30 Identities = 175/234 (75%), Gaps = 7/234 (3%) Strand=Plus/Plus Query 177910 AGGTTAAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGG 177969 |||| || |||| | || || ||||| || || || ||||| || |||||||| |||| Sbjct 5719618 AGGTCAACATGC---AGATCTTTGTGAAGACCCTGACTGGAAAGACTATCACCCTTGAGG 5719674 Query 177970 TGGAAAGCTCAG--ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAAT 178027 |||| || ||| ||||||||||||| || || ||||| |||||||| || || || Sbjct 5719675 TGGA--GCCCAGTGACACCATCGAGAATGTGAAGGCCAAGATCCAGGACAAGGAGGGCAT 5719732 Query 178028 CCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCT 178087 ||||| || ||||| | | |||||||| || || ||||| |||||||| | ||||| Sbjct 5719733 TCCTCCAGATCAGCAGAGGTTGATCTTCGCTGGCAAGCAGCTGGAAGATGGTCGTACTCT 5719792 Query 178088 TGCCGATTATAACGTCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAG 178141 | || || ||| |||| ||||| ||||| ||||| ||||| || | ||||| Sbjct 5719793 CTCTGACTACAACATCCAGAAAGAGTCAACTCTGCACCTTGTCCTGCGCCTCAG 5719846 Score = 125 bits (138), Expect = 2e-23 Identities = 161/220 (73%), Gaps = 4/220 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || || ||||| || || || || || || |||||||| ||||| || || ||| Sbjct 5719857 CAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTGGAGGTTGA--GCCCAGTG 5719914 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||||||||| || || ||||| |||||||| || || || || || ||||||| Sbjct 5719915 ACACCATCGAGAATGTGAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCAGACCAGC 5719974 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | || ||||| || || || ||||| || ||||| | || || | ||||| ||| Sbjct 5719975 AGAGGCTGATCTTTGCTGGCAAGCAGCTGGAGGATGGGCGCACCCTGTCAGATTACAACA 5720034 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAG 178141 |||| || ||||| || ||||| || || || | ||||| Sbjct 5720035 TCCAGAAGGAATCCACCCTGCACCTGGTGCTGCGCCTCAG 5720074 >seq19 Length=13664266 Score = 127 bits (140), Expect = 5e-24 Identities = 160/217 (74%), Gaps = 7/217 (3%) Strand=Plus/Minus Query 177915 AAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA 177974 ||||||| | || ||||| || || | || || || || |||||||| ||||| || Sbjct 12085555 AAAATGC---AGATCTTCGTCAAGACCTTGACTGGCAAGACCATCACCCTTGAGGTCGA- 12085500 Query 177975 AGCTCAG--ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTC 178032 || ||| ||||||| || || ||||| ||||| || ||||| ||||| ||||||| Sbjct 12085499 -GCCCAGTGACACCATTGAAAATGTCAAGGCCAAGATCCAAGACAAGGAAGGCATCCCTC 12085441 Query 178033 CGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCG 178092 | |||||||| | || ||||| || || || ||||| || ||||| | || || | | Sbjct 12085440 CTGACCAGCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAGGATGGCCGTACCCTCTCTG 12085381 Query 178093 ATTATAACGTCCAAAAAGAATCAACACTGCATCTTGT 178129 | || ||| |||| || ||||| ||||||||||| || Sbjct 12085380 ACTACAACATCCAGAAGGAATCCACACTGCATCTCGT 12085344 >seq110 Length=666948 Score = 91.5 bits (100), Expect = 4e-13 Identities = 83/103 (81%), Gaps = 4/103 (4%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCA--G 177981 || || |||||||| || || || || ||||| ||||||||||||||||| || || | Sbjct 229143 CAGATCTTCGTGAAGACCCTGACGGGCAAAACCATCACCCTCGAGGTGGA--GCCCAATG 229086 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGG 178024 |||||||||||||||| ||| ||||| ||||| || ||||| Sbjct 229085 ACACCATCGAGAACGTGAAAGCCAAGATCCAGGATAAGGAAGG 229043 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1199036497853600