Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Serinus_20canaria_20[refseq_20GCF_5F000534875.1_202014-01-15] 304,400 sequences; 1,152,100,110 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq29 138 1e-27 seq204287 120 3e-22 seq19 109 5e-19 seq25213 98.7 9e-16 >seq29 Length=9066916 Score = 138 bits (152), Expect = 1e-27 Identities = 169/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 41632 ACCGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTC 41691 || ||| || | || || | |||||| ||||| ||| |||||||| ||||| || || Sbjct 5720084 ACAGCCCCCCCTGAGGCGCAGCACCAGGTGCAGGGTGGATTCCTTCTGGATGTTGTAATC 5720025 Query 41692 GGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGC 41751 || ||||||||| | || || ||||||||||| || || ||||| | ||| ||||| | Sbjct 5720024 TGACAGGGTGCGCCCATCCTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCTGG 5719965 Query 41752 GGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTC 41811 ||||| || |||||||||| ||| || ||||| | | ||||| || | ||| Sbjct 5719964 GGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCGATGGTGTCACTGGGCTC 5719905 Query 41812 CACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||||||| || || || || || ||||| ||||| || || |||||||| Sbjct 5719904 AACCTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 5719854 Score = 116 bits (128), Expect = 3e-21 Identities = 153/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713 || || ||||| || ||| ||||| ||||| ||||| ||||| || || | || || Sbjct 5719834 ACAAGGTGCAGAGTTGACTCTTTCTGGATGTTGTAGTCAGAGAGAGTACGACCATCTTCC 5719775 Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATG 41773 ||||||||||| ||||| |||| | ||| || || | |||| || |||||||||| | Sbjct 5719774 AGCTGCTTGCCAGCGAAGATCAACCTCTGCTGATCTGGAGGAATGCCCTCCTTGTCCTGG 5719715 Query 41774 ATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTA 41833 || || ||||| | | ||||| || | ||||||||| | || || || || Sbjct 5719714 ATCTTGGCCTTCACATTCTCGATGGTGTCACTGGGCTCCACCTCAAGGGTGATAGTCTTT 5719655 Query 41834 CCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 || ||||| ||||| || || ||||||||||| Sbjct 5719654 CCAGTCAGGGTCTTCACAAAGATCTGCATGTT 5719623 >seq204287 Length=600 Score = 120 bits (132), Expect = 3e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713 || || ||||| || ||| ||||| ||||| ||||| || ||||||||| | || || Sbjct 311 ACAAGGTGCAGAGTTGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCC 370 Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATG 41773 ||||||||||| ||||| ||||| | ||| ||||| | || | | ||||||||| | Sbjct 371 AGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGGTCGGGAGGGATACCTTCCTTGTCCTGG 430 Query 41774 ATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTA 41833 || || ||||| | | ||||| || | ||| ||||||| || || || || Sbjct 431 ATCTTGGCCTTCACATTCTCGATGGTGTCACTGGGCTCAACCTCCAGAGTGATGGTCTTG 490 Query 41834 CCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || ||||| || |||||||| |||||||| Sbjct 491 CCAGTCAGGGTTTTTACGAAGATCTGCAT 519 Score = 114 bits (126), Expect = 1e-20 Identities = 156/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 ||||| | |||||| ||||| ||| |||||||| ||||| || || || ||||| || Sbjct 74 AGACGCAGCACCAGGTGCAGGGTGGATTCCTTCTGGATGTTGTAATCTGACAGGGTACGA 133 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 | || || ||||||||||| ||||| ||||| | ||| ||||| | || | | ||| Sbjct 134 CCATCCTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGGTCGGGAGGGATACCTTCC 193 Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTT 41824 |||||| ||| || ||||| | | ||||| || | ||| || |||| || Sbjct 194 TTGTCCTGGATCTTGGCCTTCACATTCTCGATGGTGTCACTGGGCTCGACTTCCAGGGTG 253 Query 41825 ATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || || || || ||||| ||||| || || |||||||| Sbjct 254 ATAGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 291 >seq19 Length=13664266 Score = 109 bits (120), Expect = 5e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || || || | ||| |||||||| ||| |||||||| ||||| ||||| ||| Sbjct 12085326 CCACCCCGCAGGCGCAGCACGAGATGCAGTGTGGATTCCTTCTGGATGTTGTAGTCAGAG 12085385 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 ||||| || | || || ||||||||||| || || ||||| | ||| ||||| | || Sbjct 12085386 AGGGTACGGCCATCCTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGG 12085445 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACC 41815 | || |||||||| ||| || ||| | | ||||| || | ||| ||| Sbjct 12085446 ATGCCTTCCTTGTCTTGGATCTTGGCCTTGACATTTTCAATGGTGTCACTGGGCTCGACC 12085505 Query 41816 TCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 || | || || || || || |||| ||||| ||||| |||||||| || Sbjct 12085506 TCAAGGGTGATGGTCTTGCCAGTCAAGGTCTTGACGAAGATCTGCATTTT 12085555 Score = 98.7 bits (108), Expect = 9e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || || || | || || ||||| || ||||||||| || || ||||| ||| Sbjct 12085098 CCACCCCGCAGGCGCAGGACAAGGTGCAGAGTTGACTCCTTCTGGATATTGTAGTCAGAG 12085157 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 |||||||| | || || ||||||||||| || || ||||| | ||| ||||| | || Sbjct 12085158 AGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGG 12085217 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAAC-GACGACACAGTGTCGCTCGACTCCAC 41814 | || ||||||| | || | || |||| || | | ||||| || | || || Sbjct 12085218 ATGCCTTCCTTGT-CTTGGATCTTGGCTTTGACATTCTCAATGGTGTCACTGGGTTCGAC 12085276 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||| || || || || || ||||| ||||| || || |||||||| Sbjct 12085277 TTCCAGAGTGATGGTCTTGCCAGTCAGGGTCTTGACAAAGATCTGCAT 12085324 >seq25213 Length=167 Score = 98.7 bits (108), Expect = 9e-16 Identities = 84/104 (81%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 ||||| | |||||| ||||| ||| |||||||| ||||| ||||| || ||||||||| Sbjct 51 AGACGCAGCACCAGGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGC 110 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTC 41748 | || || ||||||||||| ||||| ||||| | ||| ||||| Sbjct 111 CCATCTTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGGTC 154 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 460544933280000