Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sporophila_20hypoxantha_20[genbank_20GCA_5F002167245.1_202017-06-05] 5,095 sequences; 1,067,760,248 total letters Query= NC_001731.1 Length=190289 Score E Sequences producing significant alignments: (Bits) Value seq277 136 5e-27 seq259 100 3e-16 >seq277 Length=11881298 Score = 136 bits (150), Expect = 5e-27 Identities = 174/238 (73%), Gaps = 4/238 (2%) Strand=Plus/Minus Query 83119 GGGCGTGCCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCGTTGCGGCA 83178 |||| |||||| | || | | |||||||||||||||||||| | ||| |||||||| Sbjct 3330469 GGGCACGCCGTCGGGGCCAATGAGGAACTTCTCGAAGTTCCAGGAGATGTCATTGCGGCA 3330410 Query 83179 CACTGGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAGCGTGCTCATGTCGTCGCTAGG 83238 ||| || ||||| ||| ||| |||| | ||| |||| ||||||| || Sbjct 3330409 CACCGGGGACCAAATGATGTACTGCGGGTTGGTCATCAGCGACGAGGGGTCGTCGTGCGG 3330350 Query 83239 CGCCGGCAGGGCCTCTCGTAGGAAGGCGAAGAGCGGATGTGC--CCTTGCACCGTTGACC 83296 ||||| |||||| ||||||| ||| || || || || |||| | |||| ||| Sbjct 3330349 GAAGGGCAGCGCCTCTTTCAGGAAGGTGAACAGAGGGTGCGCGTCCTTCC--CGTTCACC 3330292 Query 83297 TCGCACTTCTCGAAGAGCATAAAGTTCGGCTCGAAGCCGTTCCCAGGACGGACGTGCT 83354 |||||||||||||| | ||| || || |||| ||||||| | |||||||| ||||||| Sbjct 3330291 TCGCACTTCTCGAACATCATGAAATTGGGCTTGAAGCCGCTGCCAGGACGAACGTGCT 3330234 >seq259 Length=19574136 Score = 100 bits (110), Expect = 3e-16 Identities = 210/302 (70%), Gaps = 12/302 (4%) Strand=Plus/Plus Query 83065 CTCGATGTCGGGCTCCACGGCCAGGGTCTGG-CAG-CGGTGGCTGTACCTGCGCACGGGC 83122 || |||||||||||||| || || | ||| || ||| ||||||| | || | || Sbjct 18259028 CTGGATGTCGGGCTCCA--GCTGGGCTGTGGGCACACGGGGGCTGTAGCGCCGGAACGGT 18259085 Query 83123 GTGCCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCGTTGCGGCACACT 83182 || |||| ||||||| ||||||||| || ||||||| | ||| ||| | ||| Sbjct 18259086 TCCCCCTCAGGCCCCACCAGGAACTTCTCAAAATTCCAGGAGATATCGGAGCGCCGCACA 18259145 Query 83183 GGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAGCGTGCTCATG-TCGTCGCTAGGCGC 83241 || |||| | | | |||| ||| || || |||| || | |||||| || || Sbjct 18259146 GGGCTCCAGACGACAAAGCGGGGCTCGGCCATCAG-GTGCGCAGGCTCGTCGGCCGGTGC 18259204 Query 83242 CGGCAGG-GCCTCTCGTAGGAAGGCGAAGAGCGGATG--TGCCCTTGCACCGTTGACCTC 83298 |||||| | || | ||| ||||||| | ||||| || | | | |||| |||| Sbjct 18259205 GGGCAGGTGAGCCTTG-AGGTAGGCGAACACGGGATGGGTGTCACTCC--CGTTCACCTG 18259261 Query 83299 GCACTTCTCGAAGAGCATAAAGTTCGGCTCGAAGCCGTTCCCAGGACGGACGTGCTTCAG 83358 |||||||| ||| || | ||||| ||||||||||| ||| || || ||||||||||| Sbjct 18259262 GCACTTCTGGAACAGGGTGAAGTTGGGCTCGAAGCCACCCCCGGGCCGCACGTGCTTCAG 18259321 Query 83359 GG 83360 || Sbjct 18259322 GG 18259323 Score = 96.9 bits (106), Expect = 4e-15 Identities = 115/154 (75%), Gaps = 3/154 (2%) Strand=Plus/Plus Query 83388 TTTCCTGGTGACCGAACTGGTTACACGGGAACCCAAGCACTACCAGCCCCCGAGCTCCTA 83447 || |||||| || ||||||||||| ||||| || || || ||||||| ||| | || Sbjct 18259429 TTACCTGGTATCCAAACTGGTTACAGGGGAAGCCCAGTACGACCAGCCGCCGGG--GGTA 18259486 Query 83448 GGCGCCGCTGCAGCTCGTTCATCTGAGTGTACTCCCGGACCGTGCTACCTCAGAGGGACG 83507 ||| || |||| ||| | ||| ||||| ||||| |||||| | |||||||| || | Sbjct 18259487 -GCGGGCTTGGAGCTGGTTGAGCTGGGTGTAATCCCGCACCGTGGTGCCTCAGAGTGAAG 18259545 Query 83508 CTACGTTCTCGATGAGCAAGACCCGGCCCCGTAA 83541 | |||||||| || || | || |||||||| || Sbjct 18259546 CCACGTTCTCAATCAGGACCACGCGGCCCCGGAA 18259579 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 608758027253800