Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sporophila_20hypoxantha_20[genbank_20GCA_5F002167245.1_202017-06-05] 5,095 sequences; 1,067,760,248 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq290 131 1e-25 seq408 100 2e-16 >seq290 Length=3199669 Score = 131 bits (144), Expect = 1e-25 Identities = 168/232 (72%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || |||| ||| | ||||||| |||| ||||| ||||| || ||||| || || | | Sbjct 2644600 CCACCTCTCAGGCGCAGCACCAGGTGCAGGGTGGATTCCTTCTGGATGTTGTAATCAGAC 2644541 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 ||||| | ||||||||||||| ||||| ||| | || || ||||||||||| ||| Sbjct 2644540 AGGGTGCGCCCGTCCTCCAGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCGGGGGGA 2644481 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||| || ||||| |||||| ||||| | | | || |||| ||||||| Sbjct 2644480 AAGCCCTCTTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCACTGGGCTCCACC 2644421 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATTTTGA 21180 || | ||| ||||||||||| || | || || ||||| || ||||| |||| Sbjct 2644420 TCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATGTTGA 2644369 Score = 113 bits (124), Expect = 4e-20 Identities = 156/213 (73%), Gaps = 4/213 (2%) Strand=Plus/Minus Query 20964 AGCACCATATGCAAAG-TGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTC 21022 ||||||| ||||| | |||| ||||| || ||||| ||||| | |||||| | |||| Sbjct 2645040 AGCACCAG-TGCAAGGGTGGATTCCTTCTGGATGTT-TAGTCAGACAGGGTGCGCCCGTC 2644983 Query 21023 CTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTC 21082 |||||||| ||||| ||| | || || ||||||||||| || | ||||||||||| Sbjct 2644982 TTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGAATCCCTTCCTTGTC 2644923 Query 21083 GGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGT 21142 |||||| ||||| | ||| || |||| ||||||| |||| || ||||| Sbjct 2644922 CTGGATCTTGGCCTTCACATTCTCGA-GGTGTCACTGGGCTCCACCTCCAGAGTGATGGT 2644864 Query 21143 CTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 |||||| || | || || ||||| || ||||| Sbjct 2644863 CTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 2644831 Score = 100 bits (110), Expect = 2e-16 Identities = 153/214 (71%), Gaps = 3/214 (1%) Strand=Plus/Minus Query 20964 AGCACCATA-TGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTC 21022 ||||||| |||| ||| ||||| || || ||||| ||||| | ||||| | |||| Sbjct 2644814 AGCACCAGGGTGCAGAGTTGACTCTTTCTGGATGTTGTAGTCAGAGAGGGTGCGCCCGTC 2644755 Query 21023 CTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTC 21082 |||||||| ||||| || | || | ||||||||||| ||| | ||| |||||||| Sbjct 2644754 TTCCAGCTGCTTGCCAGCGAAGATCAACCTCTGCTGGTCAGGGGGAATGCCCTCCTTGTC 2644695 Query 21083 GGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGT 21142 |||||| ||| || | ||| || |||| ||||||| |||| ||| || || Sbjct 2644694 CTGGATCTTGGCTTTGACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGAT-GT 2644636 Query 21143 CTTGCCGGTTAACGTTTTGACAAATAT-TTGCAT 21175 ||| || || | || || ||||| || |||||| Sbjct 2644635 CTTACCAGTCAGGGTCTTCACAAAGATCTTGCAT 2644602 Score = 100 bits (110), Expect = 2e-16 Identities = 154/215 (72%), Gaps = 5/215 (2%) Strand=Plus/Minus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTAT--AGTCCGCCAGGGTTTGGGCGT 21021 ||||||| |||| ||||| ||||| || ||||| | |||| | |||||| | | | Sbjct 2645723 AGCACCAGGTGCAGGGTGGATTCCTTCTGGATGTTGTTAAGTCAGACAGGGTGCGACCAT 2645664 Query 21022 CCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGT 21081 |||||||||| ||||| ||| | || || ||||||||||| ||| | ||| ||||||| Sbjct 2645663 CCTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCGGGGGGAATGCCCTCCTTGT 2645604 Query 21082 CGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTC-CGTTTCCACGGTAATG 21140 | |||||| ||||| | ||| || ||| | ||||| | |||| || || Sbjct 2645603 CCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCA-CTGGCTCACACCTCCAGAGTGAT- 2645546 Query 21141 GTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 |||||||| || | || || ||||| || ||||| Sbjct 2645545 GTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 2645511 Score = 87.8 bits (96), Expect = 2e-12 Identities = 158/226 (70%), Gaps = 4/226 (2%) Strand=Plus/Minus Query 20952 CCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGG 21011 |||| ||| | ||||||| |||| ||||| ||||| || ||||| ||||| | |||| Sbjct 2645279 CCTCTCAGACGCAGCACCAGGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCGGACAGG 2645220 Query 21012 GTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACG 21071 || | | || |||||||| || || ||| | || || ||||||||||| ||| | | Sbjct 2645219 GTGCGACCATCTTCCAGCTGCTTCCCTGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATG 2645160 Query 21072 CCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCC 21131 || | |||||| |||||| ||||| | | | || ||| | || || |||| Sbjct 2645159 CCCT-CTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCA-CTGGTTCGACTTCC 2645102 Query 21132 ACGGTAATGG-TCTTGCCGGTTAACGTTTTGACAAA-TATTTGCAT 21175 | ||| |||| | ||||| || | || || ||||| || ||||| Sbjct 2645101 AGGGTGATGGTTTTTGCCAGTCAGGGTCTTCACAAAGAATCTGCAT 2645056 Score = 87.8 bits (96), Expect = 2e-12 Identities = 152/215 (71%), Gaps = 6/215 (3%) Strand=Plus/Minus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGT-C 21022 ||||||| |||| |||| |||| || || ||||| ||||| | ||||| | | | | Sbjct 2645494 AGCACCAGGTGCAGAGTG-ACTCTTTCTGGATGTTGTAGTCAGAGAGGGTGCGCCCATTC 2645436 Query 21023 CTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCC--ACGGGCACGCCTTCCTTG 21080 ||||||||| ||||| || | || || |||||| |||| | ||| | ||||||||| Sbjct 2645435 CTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGC-GGTCAGGAAGGGATC-CCTTCCTTG 2645378 Query 21081 TCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATG 21140 || |||||| ||| || | ||| || |||| |||||| | | | || ||| Sbjct 2645377 TCCTGGATCTTGGCTTTGACATTCTCGATGGTGTCACTGGGCTCAACTCCGAGAGTGATG 2645318 Query 21141 GTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 |||||||| || | || || ||||| || ||||| Sbjct 2645317 GTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 2645283 >seq408 Length=880842 Score = 100 bits (110), Expect = 2e-16 Identities = 163/231 (71%), Gaps = 3/231 (1%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 ||| | ||||| | ||||||| |||| || || ||||| || ||||| ||||| | Sbjct 118322 CCCACCCGCAGGCGCAGCACCAGGTGCAGGGTAGATTCCTTCTGGATGTTGTAGTCAGAA 118381 Query 21009 -AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGG 21067 ||||| || | || ||||| || || || ||| | || || ||||||||||| || Sbjct 118382 GAGGGTACGGCCATCTTCCAG-TGCTT-CCTGCAAAGATCAGCCTCTGCTGGTCAGGAGG 118439 Query 21068 CACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGT 21127 | |||||||||||| |||||| ||| || | | | || |||| |||||| Sbjct 118440 GATGCCTTCCTTGTCTTGGATCTTGGCTTTGACATTCTCAATGGTGTCACTGGGCTCGAC 118499 Query 21128 TTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATTTT 21178 || | ||| ||||||||||| || | || ||||| || || |||||||| Sbjct 118500 CTCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTGACGAAMATCTGCATTTT 118550 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422232979683020