Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sporophila_20hypoxantha_20[genbank_20GCA_5F002167245.1_202017-06-05] 5,095 sequences; 1,067,760,248 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq290 145 8e-30 seq319 134 1e-26 seq408 123 3e-23 seq113 86.0 6e-12 >seq290 Length=3199669 Score = 145 bits (160), Expect = 8e-30 Identities = 173/232 (75%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 || ||||| || || || || || || || ||||| ||||||||| | || || || || Sbjct 2644371 AACATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTTGAGGTGGAGCCC 2644430 Query 40747 ACCGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805 | |||| | | | |||| | |||| || || | |||||||||||| | ||| | || Sbjct 2644431 AGTGACACCATTGAGAACG-TGAAGGCCAAGATCCAGGACAAAGAGGGCTTTCCCCCCGA 2644489 Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865 |||||| | || |||| || ||||| |||||||| |||| ||||||||| || || Sbjct 2644490 CCAGCAGAGGCTGATCTTTGCAGGCAAGCAGCTGGAGGACGGGCGCACCCTGTCTGATTA 2644549 Query 40866 CAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 ||||||||||||||| |||| ||||| || ||| ||||| |||| || ||| Sbjct 2644550 CAACATCCAGAAGGAATCCACCCTGCACCTGGTGCTGCGCCTGAGAGGTGGC 2644601 Score = 125 bits (138), Expect = 7e-24 Identities = 168/230 (73%), Gaps = 3/230 (1%) Strand=Plus/Plus Query 40690 ATGCAA-ATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 |||||| || || || || || || || || || || |||||| | || || || ||| Sbjct 2644602 ATGCAAGATCTTTGTGAAGACCCTGACTGGTAAGAC-ATCACCCTGGAGGTGGAGCCCAG 2644660 Query 40749 CGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | | |||| | || || | ||||| |||||||| ||| | ||||| Sbjct 2644661 TGACACCATCGAGAATGTCAAAGCCAAGATCCAGGACAAGGAGGGCATTCCCCCTGACCA 2644720 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| | | |||| ||| ||||| |||||||| |||| |||||||||| |||||||| Sbjct 2644721 GCAGAGGTTGATCTTCGCTGGCAAGCAGCTGGAAGACGGGCGCACCCTCTCTGACTACAA 2644780 Query 40869 CATCCAGAAGGAGGCCACGCTGCA-TCTAGTGTTGCGCTTGAGGGGCGGC 40917 ||||||||| ||| | || ||||| || ||| ||||| | ||||| ||| Sbjct 2644781 CATCCAGAAAGAGTCAACTCTGCACCCTGGTGCTGCGCCTCAGGGGTGGC 2644830 Score = 123 bits (136), Expect = 3e-23 Identities = 166/226 (73%), Gaps = 4/226 (2%) Strand=Plus/Plus Query 40690 ATGCAAATA-TTCGTAAAAACGCTCACGGGCAAAA-CCATCACCGTCGACGTCGAAGCCA 40747 ||||| || || || || || || || ||||||| |||||||| | || |||||| ||| Sbjct 2645056 ATGCAGATTCTTTGTGAAGACCCTGACTGGCAAAAACCATCACCCTGGAAGTCGAA-CCA 2645114 Query 40748 CCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACC 40807 |||| | | | | | |||| || || | ||||| |||||||| ||| | |||| Sbjct 2645115 GTGACACCATTGAGAATGTGAAGGCCAAGATCCAGGACAA-GAGGGCATTCCCCCAGACC 2645173 Query 40808 AGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 40867 |||| | || |||| || || || |||||||| || | |||||||| |||||||| Sbjct 2645174 AGCAGAGGCTGATCTTTGCAGGGAAGCAGCTGGAAGATGGTCGCACCCTGTCCGACTACA 2645233 Query 40868 ACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGG 40913 ||||||||||||| |||| ||||| || ||| |||| |||| || Sbjct 2645234 ACATCCAGAAGGAATCCACCCTGCACCTGGTGCTGCGTCTGAGAGG 2645279 Score = 120 bits (132), Expect = 3e-22 Identities = 168/231 (73%), Gaps = 5/231 (2%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || || || ||||| || ||||| | || || ||||| Sbjct 2645511 ATGCAGATCTTTGTGAAGACCCTGACTGGCAAGAC-ATCACTCTGGAGGTGTGAGCCAGT 2645569 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| | |||| || || | ||||| |||||||| ||| | ||||| Sbjct 2645570 GACACCATCGAGAACG-TGAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCCGACCA 2645628 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACT--AC 40866 ||| | || |||| || ||||| |||||||| || | |||||||| |||| || Sbjct 2645629 GCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAGGATGGTCGCACCCTGTCTGACTTAAC 2645688 Query 40867 AACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 |||||||||||||| |||| ||||| || ||| ||||| | ||||| ||| Sbjct 2645689 AACATCCAGAAGGAATCCACCCTGCACCTGGTGCTGCGCCTCAGGGGGGGC 2645739 Score = 107 bits (118), Expect = 2e-18 Identities = 165/230 (72%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || || || ||||| |||||||| ||| || || ||| Sbjct 2645283 ATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACTCTCGGAGTTGAGCCCAGT 2645342 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCG-GACCA 40808 |||| | | | | |||| | || || | ||||| || || ||||| | |||| Sbjct 2645343 GACACCATCGAGAATGTCAAAGCCAAGATCCAGGACAAGGAAGGGATCCCTTCCTGACC- 2645401 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGAC-GAGCGCACCCTCAACGACTACA 40867 ||| | || |||| ||| ||||| |||||||| || | |||||||||| ||||||| Sbjct 2645402 GCAGAGGCTGATCTTCGCTGGCAAGCAGCTGGAGGAATGGGCGCACCCTCTCTGACTACA 2645461 Query 40868 ACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 |||||||||| || | ||| ||||| || ||| ||||| | ||||| ||| Sbjct 2645462 ACATCCAGAAAGA-GTCACTCTGCACCTGGTGCTGCGCCTCAGGGGTGGC 2645510 Score = 102 bits (112), Expect = 8e-17 Identities = 160/224 (71%), Gaps = 4/224 (2%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || || || ||||| |||||||| | || || || ||| Sbjct 2644831 ATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACTCTGGAGGTGGAGCCCAGT 2644890 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | || | | |||| || || | ||||| || || || || | |||||| Sbjct 2644891 GACACCTCGAGAATG-TGAAGGCCAAGATCCAGGACAAGGAAGGGATTCCTCCTGACCAG 2644949 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || | || |||| || ||||| |||||||| |||| ||||||||| ||||| ||| Sbjct 2644950 CAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGACGGGCGCACCCTGTCTGACTA-AAC 2645008 Query 40870 ATCCAGAAGGAGGCCACGC-TGCATCTAGTGTTGCGCTTGAGGG 40912 ||||||||||| |||| | |||| || ||| | ||| | |||| Sbjct 2645009 ATCCAGAAGGAATCCACCCTTGCA-CTGGTGCTACGCCTCAGGG 2645051 >seq319 Length=32890058 Score = 134 bits (148), Expect = 1e-26 Identities = 98/114 (86%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 116576 GAGCCGCTGCTGCGCGAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGAC 116635 |||||||||||||| |||||||||||||||||||| || |||||||| || |||| ||| Sbjct 31273088 GAGCCGCTGCTGCGGGAGAACCCCCGCCGGTTCGTCATCTTCCCCATCCAGTACCACGAC 31273147 Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTG 116689 || |||| |||||||| ||||||||||| || |||||||| | ||||||||| Sbjct 31273148 ATCTGGCAGATGTACAAGAAGGCCGAGGCCTCCTTCTGGACGGCGGAGGAGGTG 31273201 >seq408 Length=880842 Score = 123 bits (136), Expect = 3e-23 Identities = 167/229 (73%), Gaps = 3/229 (1%) Strand=Plus/Minus Query 40685 GAAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAG 40744 |||||||||| || ||||| || || || || ||||| ||||||||| | || ||||| Sbjct 118552 GAAAAATGCAGATKTTCGTCAAGACCCTGACTGGCAAGACCATCACCCTTGAGGTCGAGC 118493 Query 40745 CCACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGG 40804 ||| |||| | | | | |||| | || || | ||||| || |||||||| | | Sbjct 118492 CCAGTGACACCATTGAGAATGTCAAAGCCAAGATCCAAGACAAGGAAGGCATCCCTCCTG 118433 Query 40805 ACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAAC-GAC 40863 ||||||| | || |||| || || || || ||||| || | || |||||| | ||| Sbjct 118432 ACCAGCAGAGGCTGATCTTTGCAGG-AAGCA-CTGGAAGATGGCCGTACCCTCTTCTGAC 118375 Query 40864 TACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGG 40912 ||||||||||||||||| | || ||||| || ||| ||||| || ||| Sbjct 118374 TACAACATCCAGAAGGAATCTACCCTGCACCTGGTGCTGCGCCTGCGGG 118326 Score = 95.1 bits (104), Expect = 1e-14 Identities = 165/230 (72%), Gaps = 10/230 (4%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAA-ACCATCACCGTCGACGTCGAAGCCAC 40748 ||||| || || || || || || || |||||| ||||||||| | || ||||| ||| Sbjct 118097 ATGCAGATCTTTGTCAAGACCCTGACTGGCAAAGACCATCACCTT-GAGGTCGAGCCCAG 118039 Query 40749 CGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | | |||||| || || | ||||| || ||||||| | | ||||| Sbjct 118038 TGACACCATTGAGAATGTCAAGGCCAAGATCCAGGACAAGGAAGGCATCCTC-CTGACCA 117980 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 | | | || |||| ||| ||||| |||||||| || | || ||||| |||||||| Sbjct 117979 GAGAGG-CTGATCTTCGCAGGCAAGCAGCTGGAAGATGGCCGTACCCTGTCTGACTACAA 117921 Query 40869 CA-TCCAGAAGGAGGCCACGCTGCATCTAGTG-TTGCGCTTGAGGGGCGG 40916 || |||||||||| | | ||||| || ||| ||||| || |||| || Sbjct 117920 CATTCCAGAAGGA--CTA--CTGCACCTGGTGCCTGCGCCTGCGGGGTGG 117875 Score = 93.3 bits (102), Expect = 4e-14 Identities = 164/229 (72%), Gaps = 9/229 (4%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || || || ||||| ||||||||| | || ||||| |||| Sbjct 118320 ATGCAGATCTTTGTCAAGACCCTGACTGGCAAGACCATCACCTTGGA-GTCGA-GCCAGT 118263 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCG-GACCA 40808 |||| | | | | ||||| || | | | ||||| ||||||||| || | ||||| Sbjct 118262 GACACCATTGAGAATGTCAAGCCAAGA-TCCAAGACAAGGAGGGCATCTCCTCCTGACCA 118204 Query 40809 GCAACGA-CTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 40867 ||| | || |||| | ||||| || ||||| || | || ||||| ||||||| Sbjct 118203 GCAGAGCGCTGATCTTCA--GGCAAGCA-CTGGAAGATGGCCGTACCCTGTCTGACTACA 118147 Query 40868 ACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 |||||||||| || |||| ||||| || ||| ||||| | ||||| || Sbjct 118146 ACATCCAGAAAGAATCCACTCTGCA-CTTGTGCTGCGCCTCAGGGGTGG 118099 >seq113 Length=61408302 Score = 86.0 bits (94), Expect = 6e-12 Identities = 94/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 117042 TGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTT 117101 |||| ||||| || || || || ||| ||||||||||||| || || || ||||||| Sbjct 43800193 TGGTTGCCTTTGCTGCAGTYGAAGGCATCTTCTTTTCGGGTTCCTTTGCTGCTATATTTT 43800252 Query 117102 GGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGG 117161 |||| ||||| | ||||| ||||| || |||||||| ||| || || || ||| | Sbjct 43800253 GGCTGAAGAAGAGGGGCCTGATGCCTGGATTGACTTTCTCCAATGAACTTATTAGCAGAG 43800312 Query 117162 ACGAGG 117167 | |||| Sbjct 43800313 ATGAGG 43800318 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515186386977200