Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sporophila_20hypoxantha_20[genbank_20GCA_5F002167245.1_202017-06-05]
5,095 sequences; 1,067,760,248 total letters
Query= NC_001973.1
Length=161046
Score E
Sequences producing significant alignments: (Bits) Value
seq290 145 8e-30
seq319 134 1e-26
seq408 123 3e-23
seq113 86.0 6e-12
>seq290
Length=3199669
Score = 145 bits (160), Expect = 8e-30
Identities = 173/232 (75%), Gaps = 2/232 (1%)
Strand=Plus/Plus
Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746
|| ||||| || || || || || || || ||||| ||||||||| | || || || ||
Sbjct 2644371 AACATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTTGAGGTGGAGCCC 2644430
Query 40747 ACCGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805
| |||| | | | |||| | |||| || || | |||||||||||| | ||| | ||
Sbjct 2644431 AGTGACACCATTGAGAACG-TGAAGGCCAAGATCCAGGACAAAGAGGGCTTTCCCCCCGA 2644489
Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865
|||||| | || |||| || ||||| |||||||| |||| ||||||||| || ||
Sbjct 2644490 CCAGCAGAGGCTGATCTTTGCAGGCAAGCAGCTGGAGGACGGGCGCACCCTGTCTGATTA 2644549
Query 40866 CAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917
||||||||||||||| |||| ||||| || ||| ||||| |||| || |||
Sbjct 2644550 CAACATCCAGAAGGAATCCACCCTGCACCTGGTGCTGCGCCTGAGAGGTGGC 2644601
Score = 125 bits (138), Expect = 7e-24
Identities = 168/230 (73%), Gaps = 3/230 (1%)
Strand=Plus/Plus
Query 40690 ATGCAA-ATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748
|||||| || || || || || || || || || || |||||| | || || || |||
Sbjct 2644602 ATGCAAGATCTTTGTGAAGACCCTGACTGGTAAGAC-ATCACCCTGGAGGTGGAGCCCAG 2644660
Query 40749 CGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808
|||| | | | | |||| | || || | ||||| |||||||| ||| | |||||
Sbjct 2644661 TGACACCATCGAGAATGTCAAAGCCAAGATCCAGGACAAGGAGGGCATTCCCCCTGACCA 2644720
Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868
||| | | |||| ||| ||||| |||||||| |||| |||||||||| ||||||||
Sbjct 2644721 GCAGAGGTTGATCTTCGCTGGCAAGCAGCTGGAAGACGGGCGCACCCTCTCTGACTACAA 2644780
Query 40869 CATCCAGAAGGAGGCCACGCTGCA-TCTAGTGTTGCGCTTGAGGGGCGGC 40917
||||||||| ||| | || ||||| || ||| ||||| | ||||| |||
Sbjct 2644781 CATCCAGAAAGAGTCAACTCTGCACCCTGGTGCTGCGCCTCAGGGGTGGC 2644830
Score = 123 bits (136), Expect = 3e-23
Identities = 166/226 (73%), Gaps = 4/226 (2%)
Strand=Plus/Plus
Query 40690 ATGCAAATA-TTCGTAAAAACGCTCACGGGCAAAA-CCATCACCGTCGACGTCGAAGCCA 40747
||||| || || || || || || || ||||||| |||||||| | || |||||| |||
Sbjct 2645056 ATGCAGATTCTTTGTGAAGACCCTGACTGGCAAAAACCATCACCCTGGAAGTCGAA-CCA 2645114
Query 40748 CCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACC 40807
|||| | | | | | |||| || || | ||||| |||||||| ||| | ||||
Sbjct 2645115 GTGACACCATTGAGAATGTGAAGGCCAAGATCCAGGACAA-GAGGGCATTCCCCCAGACC 2645173
Query 40808 AGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 40867
|||| | || |||| || || || |||||||| || | |||||||| ||||||||
Sbjct 2645174 AGCAGAGGCTGATCTTTGCAGGGAAGCAGCTGGAAGATGGTCGCACCCTGTCCGACTACA 2645233
Query 40868 ACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGG 40913
||||||||||||| |||| ||||| || ||| |||| |||| ||
Sbjct 2645234 ACATCCAGAAGGAATCCACCCTGCACCTGGTGCTGCGTCTGAGAGG 2645279
Score = 120 bits (132), Expect = 3e-22
Identities = 168/231 (73%), Gaps = 5/231 (2%)
Strand=Plus/Plus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || || || || || || || ||||| || ||||| | || || |||||
Sbjct 2645511 ATGCAGATCTTTGTGAAGACCCTGACTGGCAAGAC-ATCACTCTGGAGGTGTGAGCCAGT 2645569
Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808
|||| | | | |||| | |||| || || | ||||| |||||||| ||| | |||||
Sbjct 2645570 GACACCATCGAGAACG-TGAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCCGACCA 2645628
Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACT--AC 40866
||| | || |||| || ||||| |||||||| || | |||||||| |||| ||
Sbjct 2645629 GCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAGGATGGTCGCACCCTGTCTGACTTAAC 2645688
Query 40867 AACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917
|||||||||||||| |||| ||||| || ||| ||||| | ||||| |||
Sbjct 2645689 AACATCCAGAAGGAATCCACCCTGCACCTGGTGCTGCGCCTCAGGGGGGGC 2645739
Score = 107 bits (118), Expect = 2e-18
Identities = 165/230 (72%), Gaps = 4/230 (2%)
Strand=Plus/Plus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || || || || || || || ||||| |||||||| ||| || || |||
Sbjct 2645283 ATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACTCTCGGAGTTGAGCCCAGT 2645342
Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCG-GACCA 40808
|||| | | | | |||| | || || | ||||| || || ||||| | ||||
Sbjct 2645343 GACACCATCGAGAATGTCAAAGCCAAGATCCAGGACAAGGAAGGGATCCCTTCCTGACC- 2645401
Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGAC-GAGCGCACCCTCAACGACTACA 40867
||| | || |||| ||| ||||| |||||||| || | |||||||||| |||||||
Sbjct 2645402 GCAGAGGCTGATCTTCGCTGGCAAGCAGCTGGAGGAATGGGCGCACCCTCTCTGACTACA 2645461
Query 40868 ACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917
|||||||||| || | ||| ||||| || ||| ||||| | ||||| |||
Sbjct 2645462 ACATCCAGAAAGA-GTCACTCTGCACCTGGTGCTGCGCCTCAGGGGTGGC 2645510
Score = 102 bits (112), Expect = 8e-17
Identities = 160/224 (71%), Gaps = 4/224 (2%)
Strand=Plus/Plus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || || || || || || || ||||| |||||||| | || || || |||
Sbjct 2644831 ATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACTCTGGAGGTGGAGCCCAGT 2644890
Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809
|||| | | || | | |||| || || | ||||| || || || || | ||||||
Sbjct 2644891 GACACCTCGAGAATG-TGAAGGCCAAGATCCAGGACAAGGAAGGGATTCCTCCTGACCAG 2644949
Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869
|| | || |||| || ||||| |||||||| |||| ||||||||| ||||| |||
Sbjct 2644950 CAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGACGGGCGCACCCTGTCTGACTA-AAC 2645008
Query 40870 ATCCAGAAGGAGGCCACGC-TGCATCTAGTGTTGCGCTTGAGGG 40912
||||||||||| |||| | |||| || ||| | ||| | ||||
Sbjct 2645009 ATCCAGAAGGAATCCACCCTTGCA-CTGGTGCTACGCCTCAGGG 2645051
>seq319
Length=32890058
Score = 134 bits (148), Expect = 1e-26
Identities = 98/114 (86%), Gaps = 0/114 (0%)
Strand=Plus/Plus
Query 116576 GAGCCGCTGCTGCGCGAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGAC 116635
|||||||||||||| |||||||||||||||||||| || |||||||| || |||| |||
Sbjct 31273088 GAGCCGCTGCTGCGGGAGAACCCCCGCCGGTTCGTCATCTTCCCCATCCAGTACCACGAC 31273147
Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTG 116689
|| |||| |||||||| ||||||||||| || |||||||| | |||||||||
Sbjct 31273148 ATCTGGCAGATGTACAAGAAGGCCGAGGCCTCCTTCTGGACGGCGGAGGAGGTG 31273201
>seq408
Length=880842
Score = 123 bits (136), Expect = 3e-23
Identities = 167/229 (73%), Gaps = 3/229 (1%)
Strand=Plus/Minus
Query 40685 GAAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAG 40744
|||||||||| || ||||| || || || || ||||| ||||||||| | || |||||
Sbjct 118552 GAAAAATGCAGATKTTCGTCAAGACCCTGACTGGCAAGACCATCACCCTTGAGGTCGAGC 118493
Query 40745 CCACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGG 40804
||| |||| | | | | |||| | || || | ||||| || |||||||| | |
Sbjct 118492 CCAGTGACACCATTGAGAATGTCAAAGCCAAGATCCAAGACAAGGAAGGCATCCCTCCTG 118433
Query 40805 ACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAAC-GAC 40863
||||||| | || |||| || || || || ||||| || | || |||||| | |||
Sbjct 118432 ACCAGCAGAGGCTGATCTTTGCAGG-AAGCA-CTGGAAGATGGCCGTACCCTCTTCTGAC 118375
Query 40864 TACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGG 40912
||||||||||||||||| | || ||||| || ||| ||||| || |||
Sbjct 118374 TACAACATCCAGAAGGAATCTACCCTGCACCTGGTGCTGCGCCTGCGGG 118326
Score = 95.1 bits (104), Expect = 1e-14
Identities = 165/230 (72%), Gaps = 10/230 (4%)
Strand=Plus/Minus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAA-ACCATCACCGTCGACGTCGAAGCCAC 40748
||||| || || || || || || || |||||| ||||||||| | || ||||| |||
Sbjct 118097 ATGCAGATCTTTGTCAAGACCCTGACTGGCAAAGACCATCACCTT-GAGGTCGAGCCCAG 118039
Query 40749 CGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808
|||| | | | | |||||| || || | ||||| || ||||||| | | |||||
Sbjct 118038 TGACACCATTGAGAATGTCAAGGCCAAGATCCAGGACAAGGAAGGCATCCTC-CTGACCA 117980
Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868
| | | || |||| ||| ||||| |||||||| || | || ||||| ||||||||
Sbjct 117979 GAGAGG-CTGATCTTCGCAGGCAAGCAGCTGGAAGATGGCCGTACCCTGTCTGACTACAA 117921
Query 40869 CA-TCCAGAAGGAGGCCACGCTGCATCTAGTG-TTGCGCTTGAGGGGCGG 40916
|| |||||||||| | | ||||| || ||| ||||| || |||| ||
Sbjct 117920 CATTCCAGAAGGA--CTA--CTGCACCTGGTGCCTGCGCCTGCGGGGTGG 117875
Score = 93.3 bits (102), Expect = 4e-14
Identities = 164/229 (72%), Gaps = 9/229 (4%)
Strand=Plus/Minus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || || || || || || || ||||| ||||||||| | || ||||| ||||
Sbjct 118320 ATGCAGATCTTTGTCAAGACCCTGACTGGCAAGACCATCACCTTGGA-GTCGA-GCCAGT 118263
Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCG-GACCA 40808
|||| | | | | ||||| || | | | ||||| ||||||||| || | |||||
Sbjct 118262 GACACCATTGAGAATGTCAAGCCAAGA-TCCAAGACAAGGAGGGCATCTCCTCCTGACCA 118204
Query 40809 GCAACGA-CTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 40867
||| | || |||| | ||||| || ||||| || | || ||||| |||||||
Sbjct 118203 GCAGAGCGCTGATCTTCA--GGCAAGCA-CTGGAAGATGGCCGTACCCTGTCTGACTACA 118147
Query 40868 ACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916
|||||||||| || |||| ||||| || ||| ||||| | ||||| ||
Sbjct 118146 ACATCCAGAAAGAATCCACTCTGCA-CTTGTGCTGCGCCTCAGGGGTGG 118099
>seq113
Length=61408302
Score = 86.0 bits (94), Expect = 6e-12
Identities = 94/126 (75%), Gaps = 0/126 (0%)
Strand=Plus/Plus
Query 117042 TGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTT 117101
|||| ||||| || || || || ||| ||||||||||||| || || || |||||||
Sbjct 43800193 TGGTTGCCTTTGCTGCAGTYGAAGGCATCTTCTTTTCGGGTTCCTTTGCTGCTATATTTT 43800252
Query 117102 GGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGG 117161
|||| ||||| | ||||| ||||| || |||||||| ||| || || || ||| |
Sbjct 43800253 GGCTGAAGAAGAGGGGCCTGATGCCTGGATTGACTTTCTCCAATGAACTTATTAGCAGAG 43800312
Query 117162 ACGAGG 117167
| ||||
Sbjct 43800313 ATGAGG 43800318
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 515186386977200
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