Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sporophila_20hypoxantha_20[genbank_20GCA_5F002167245.1_202017-06-05] 5,095 sequences; 1,067,760,248 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq290 102 7e-17 seq506 82.4 7e-11 >seq290 Length=3199669 Score = 102 bits (112), Expect = 7e-17 Identities = 151/214 (71%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 118526 CAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATC 118585 || ||||| ||| | || || || || || ||||||||||| || |||||| || Sbjct 2644586 CAGCACCAGGTGCAGGGTGGATTCCTTCTGGATGTTGTAATCAGACAGGGTGCGCCCGTC 2644527 Query 118586 CTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645 ||| ||||| || || || |||| || | |||||| ||||| || | |||||| ||||| Sbjct 2644526 CTCCAGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCGGGGGGAAAGCCCTCTTTGTC 2644467 Query 118646 TGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGT 118705 || || || || | || | |||||| || ||| ||||| | ||| | || Sbjct 2644466 CTGGATCTTGGCCTTCACGTTCTCAATGGTGTCACTGGGCTCCACCTCAAGGGTGATGGT 2644407 Query 118706 TTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 ||||| ||||| || || ||||| ||||||||| Sbjct 2644406 CTTGCCAGTCAGGGTCTTCACAAAGATCTGCATG 2644373 Score = 95.1 bits (104), Expect = 1e-14 Identities = 142/199 (71%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 || |||||||| || |||||||| || | |||||| || || ||||| || ||| Sbjct 2644798 GTTGACTCTTTCTGGATGTTGTAGTCAGAGAGGGTGCGCCCGTCTTCCAGCTGCTTGCCA 2644739 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 ||| |||| | | |||||| || || || |||||||||||||| || || ||| Sbjct 2644738 GCGAAGATCAACCTCTGCTGGTCAGGGGGAATGCCCTCCTTGTCCTGGATCTTGGCTTTG 2644679 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721 || | |||| |||||| || ||| ||||| | ||| | || || || ||||| || Sbjct 2644678 ACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGA-TGTCTTACCAGTCAGGGTC 2644620 Query 118722 TTTACAAAAATC-TGCATG 118739 || ||||| ||| |||||| Sbjct 2644619 TTCACAAAGATCTTGCATG 2644601 Score = 95.1 bits (104), Expect = 1e-14 Identities = 154/217 (71%), Gaps = 5/217 (2%) Strand=Plus/Minus Query 118526 CAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAA--TCGCTCATAGTGCGCGTA 118583 || ||||| ||| | || || || || || ||||||| | || || ||||| | Sbjct 2645724 CAGCACCAGGTGCAGGGTGGATTCCTTCTGGATGTTGTTAAGTCAGACAGGGTGCGACCA 2645665 Query 118584 TCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTG 118643 ||||| ||||| || ||||| |||| || | |||||| ||||| || |||||||||||| Sbjct 2645664 TCCTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCGGGGGGAATGCCCTCCTTG 2645605 Query 118644 TCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTC-CGTGCTCTCGACCTCGACGGTCAC 118702 || || || || || | |||| |||||| | |||| | ||||| | || | Sbjct 2645604 TCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGCTCAC-ACCTCCAGAGTGA- 2645547 Query 118703 CGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 || ||||| ||||| || || ||||| ||||||||| Sbjct 2645546 TGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATG 2645510 >seq506 Length=4195637 Score = 82.4 bits (90), Expect = 7e-11 Identities = 71/88 (81%), Gaps = 0/88 (0%) Strand=Plus/Plus Query 118549 CTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGA 118608 |||| ||||||||||| ||| || ||||| |||||| ||||| || |||||| ||| Sbjct 3608690 CTTTCTGAATGTTGTAGTCGGACAGTGTGCGTCCATCCTCCAGCTGCTTCCCAGCGAAGA 3608749 Query 118609 TGAGACGCTGCTGATCGGGAGGTATGCC 118636 | || ||||||||||| ||||| ||||| Sbjct 3608750 TCAGCCGCTGCTGATCCGGAGGGATGCC 3608777 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433803461165740